Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq150301 107 2e-18 seq51722 100 2e-16 seq75105 98.7 9e-16 seq54088 95.1 1e-14 >seq150301 Length=587 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| || || || ||| | || || ||||| |||||| | || Sbjct 375 CATGCAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTC 434 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||||||||| ||||| ||||| || ||||| ||||| Sbjct 435 GGATACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCA 494 Query 27107 ACAGCGTTTAAT 27118 |||||| || || Sbjct 495 ACAGCGATTGAT 506 >seq51722 Length=1631 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| |||||||||| || || ||| | ||| Sbjct 682 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATCC 623 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| || || || ||||| || ||||| |||||| Sbjct 622 GACACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAA 563 Query 27108 CAGCG 27112 ||||| Sbjct 562 CAGCG 558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || ||| | || || || ||||| || |||| Sbjct 394 ATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTCG 335 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| || || || || || || ||||| Sbjct 334 GACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAG 275 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || ||| | || ||| || || | ||||| || || Sbjct 274 CAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAAT 215 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||||||||| || Sbjct 214 ATCCAAAAGGAGTCAAC 198 >seq75105 Length=1195 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| | || |||||||||||||| | || Sbjct 597 ATGCAAATCTTTGTGAAGACGCTGACTGGAAAGACCATCACTCTTGAAGTGGAGGCTTCG 656 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| || |||||||| ||||| || ||||| ||||| Sbjct 657 GACACTATTGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 716 Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131 ||| | | || | ||||| ||| Sbjct 717 CAGAGGCTCATCTTTGCCGGTAAA 740 >seq54088 Length=1574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || ||| | || || || ||||| || |||| Sbjct 396 ATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTGGAAGTAGAGGCGTCG 337 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| || || || || || || ||||| Sbjct 336 GACACTATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCTGATCAG 277 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || ||| | || ||| || || | ||||| || || Sbjct 276 CAGCGACTGATCTTTGCTGGAAAGCAACTCGAGGACGGTCGTACATTGTCCGACTATAAT 217 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||||||||| || Sbjct 216 ATCCAAAAGGAGTCAAC 200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| || || || ||||| || |||| | |||||||||| || || ||| | ||| Sbjct 680 ATGCAGAC-TTCGTTAAGACTCTCACTGGCAGGACTATTACTCTCGAGGTTGAAGCATCC 622 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 621 GACACAATCGAAAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCACCAGATCAA 562 Query 27108 CAGCG 27112 ||||| Sbjct 561 CAGCG 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434034755442830