Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq103320 138 9e-28 >seq103320 Length=878 Score = 138 bits (152), Expect = 9e-28 Identities = 348/523 (67%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 119687 ATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTAC 119746 ||||||||||| | | |||||||||| | || ||||| || | ||| || ||||| || Sbjct 74 ATGAACTATTTTAAAGGTAAACAATTTCAAAAAGATGTGATTATTGTCGCTGTTGGTTAT 133 Query 119747 TATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGTGGTGTA 119806 |||||| | || | || |||||||| || ||| | | | ||||| | Sbjct 134 TATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATT 193 Query 119807 AACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAA 119866 |||||| ||| |||| | || |||||||| |||||||| | | | ||||| Sbjct 194 AACGTTTGTCACACAACTATTTATCGTTGGGTACAAGAATACAGTAAAGTCCTCTATCAT 253 Query 119867 ATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGAGACGTACATC 119926 | ||||| || || ||| | | | | || ||| || ||||| || || ||| Sbjct 254 CTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACTTATATC 313 Query 119927 AAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTA 119986 ||||| ||||| ||| ||| | |||||||| |||||||| || ||| || ||| Sbjct 314 AAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTA 373 Query 119987 GATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCTC 120046 || || ||| | || ||| |||| |||| ||| | || |||||||| | ||||| || Sbjct 374 GACATCTGGCTACGCAAGAAACGGGATACTCAAGCTGCTTATGCGTTCTTGAAACGACTA 433 Query 120047 ATTAAACAATTTGGTAAACCTCAAAAGGTAATT---ACAGATCAGGCACCTTCAA----- 120098 |||||| |||||| |||| || |||||| || ||| | || || || | Sbjct 434 CATAAACAGTTTGGTCAACC---AAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGT 490 Query 120099 --CGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTT-TAAACTTAAACCTGACTGCCATT 120155 | | ||| || |||| || | ||| | ||| || || ||| | || ||| Sbjct 491 TCTGCATTTAGAAA--GTTACAG--AGTAACGGTTTATATAC-TAAGACAGA---GCATC 542 Query 120156 GTACATCGAAATATCTGAATAACCTCATTGAGCAAGATCACCG 120198 | || ||| ||||| |||||||||||||||||||| || || Sbjct 543 GAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCG 585 Score = 136 bits (150), Expect = 3e-27 Identities = 258/380 (68%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 126994 ATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTAC 127053 ||||||||||| | | |||||||||| | || ||||| || | ||| || ||||| || Sbjct 74 ATGAACTATTTTAAAGGTAAACAATTTCAAAAAGATGTGATTATTGTCGCTGTTGGTTAT 133 Query 127054 TATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGTGGTGTA 127113 |||||| | || | || |||||||| || ||| | | | ||||| | Sbjct 134 TATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATT 193 Query 127114 AACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAA 127173 |||||| ||| |||| | || |||||||| |||||||| | | | ||||| Sbjct 194 AACGTTTGTCACACAACTATTTATCGTTGGGTACAAGAATACAGTAAAGTCCTCTATCAT 253 Query 127174 ATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGAGACGTACATC 127233 | ||||| || || ||| | | | | || ||| || ||||| || || ||| Sbjct 254 CTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACTTATATC 313 Query 127234 AAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTA 127293 ||||| ||||| ||| ||| | |||||||| |||||||| || ||| || ||| Sbjct 314 AAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTA 373 Query 127294 GATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATTAAACGTCTC 127353 || || ||| | || ||| |||| |||| ||| | || |||||||| | ||||| || Sbjct 374 GACATCTGGCTACGCAAGAAACGGGATACTCAAGCTGCTTATGCGTTCTTGAAACGACTA 433 Query 127354 ATTAAACAATTTGGTAAACC 127373 |||||| |||||| |||| Sbjct 434 CATAAACAGTTTGGTCAACC 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407765230833170