Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_029119.1
Length=127726
Score E
Sequences producing significant alignments: (Bits) Value
seq103320 138 9e-28
>seq103320
Length=878
Score = 138 bits (152), Expect = 9e-28
Identities = 348/523 (67%), Gaps = 22/523 (4%)
Strand=Plus/Plus
Query 119687 ATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTAC 119746
||||||||||| | | |||||||||| | || ||||| || | ||| || ||||| ||
Sbjct 74 ATGAACTATTTTAAAGGTAAACAATTTCAAAAAGATGTGATTATTGTCGCTGTTGGTTAT 133
Query 119747 TATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGTGGTGTA 119806
|||||| | || | || |||||||| || ||| | | | ||||| |
Sbjct 134 TATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATT 193
Query 119807 AACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAA 119866
|||||| ||| |||| | || |||||||| |||||||| | | | |||||
Sbjct 194 AACGTTTGTCACACAACTATTTATCGTTGGGTACAAGAATACAGTAAAGTCCTCTATCAT 253
Query 119867 ATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGAGACGTACATC 119926
| ||||| || || ||| | | | | || ||| || ||||| || || |||
Sbjct 254 CTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACTTATATC 313
Query 119927 AAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTA 119986
||||| ||||| ||| ||| | |||||||| |||||||| || ||| || |||
Sbjct 314 AAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTA 373
Query 119987 GATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCTC 120046
|| || ||| | || ||| |||| |||| ||| | || |||||||| | ||||| ||
Sbjct 374 GACATCTGGCTACGCAAGAAACGGGATACTCAAGCTGCTTATGCGTTCTTGAAACGACTA 433
Query 120047 ATTAAACAATTTGGTAAACCTCAAAAGGTAATT---ACAGATCAGGCACCTTCAA----- 120098
|||||| |||||| |||| || |||||| || ||| | || || || |
Sbjct 434 CATAAACAGTTTGGTCAACC---AAGAGTAATTGTCACGGATAAAGCGCCCTCTATTGGT 490
Query 120099 --CGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTT-TAAACTTAAACCTGACTGCCATT 120155
| | ||| || |||| || | ||| | ||| || || ||| | || |||
Sbjct 491 TCTGCATTTAGAAA--GTTACAG--AGTAACGGTTTATATAC-TAAGACAGA---GCATC 542
Query 120156 GTACATCGAAATATCTGAATAACCTCATTGAGCAAGATCACCG 120198
| || ||| ||||| |||||||||||||||||||| || ||
Sbjct 543 GAACCGTGAAGTATCTCAATAACCTCATTGAGCAAGACCATCG 585
Score = 136 bits (150), Expect = 3e-27
Identities = 258/380 (68%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 126994 ATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTAC 127053
||||||||||| | | |||||||||| | || ||||| || | ||| || ||||| ||
Sbjct 74 ATGAACTATTTTAAAGGTAAACAATTTCAAAAAGATGTGATTATTGTCGCTGTTGGTTAT 133
Query 127054 TATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGTGGTGTA 127113
|||||| | || | || |||||||| || ||| | | | ||||| |
Sbjct 134 TATCTACGTTACAATCTAAGCTATCGTGAAATTCAAGAACTCCTTTATGATCGTGGGATT 193
Query 127114 AACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAA 127173
|||||| ||| |||| | || |||||||| |||||||| | | | |||||
Sbjct 194 AACGTTTGTCACACAACTATTTATCGTTGGGTACAAGAATACAGTAAAGTCCTCTATCAT 253
Query 127174 ATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGAGACGTACATC 127233
| ||||| || || ||| | | | | || ||| || ||||| || || |||
Sbjct 254 CTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGGATGAAACTTATATC 313
Query 127234 AAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTA 127293
||||| ||||| ||| ||| | |||||||| |||||||| || ||| || |||
Sbjct 314 AAAATCAAAGGTCGTTGGCATTATCTCTATCGTGCAATTGATGCGGATGGATTGACTTTA 373
Query 127294 GATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATTAAACGTCTC 127353
|| || ||| | || ||| |||| |||| ||| | || |||||||| | ||||| ||
Sbjct 374 GACATCTGGCTACGCAAGAAACGGGATACTCAAGCTGCTTATGCGTTCTTGAAACGACTA 433
Query 127354 ATTAAACAATTTGGTAAACC 127373
|||||| |||||| ||||
Sbjct 434 CATAAACAGTTTGGTCAACC 453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407765230833170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |