Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 138 3e-27
seq51722 138 3e-27
seq48601 120 7e-22
seq150301 113 1e-19
seq52966 111 4e-19
seq75105 102 2e-16
seq150799 96.9 8e-15
>seq54088
Length=1574
Score = 138 bits (152), Expect = 3e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || ||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 172 TCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAA 231
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | || || || || ||||| || || ||||| || || || || ||||||||||
Sbjct 232 TGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAAT 291
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||| || || ||||| ||||| || || || ||||| || || || ||
Sbjct 292 TCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTC 351
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || ||||||||||| || | |||||| ||||| | ||||||
Sbjct 352 CAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
Score = 116 bits (128), Expect = 9e-21
Identities = 113/144 (78%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || || || ||||| || || |||| |||||||||||||||||| ||
Sbjct 539 TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTG 598
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| ||||||||||| ||||| || ||||||||||||||| || ||| | || |||
Sbjct 599 GCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGTG 658
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|||||||| || || |||||||
Sbjct 659 AGAGTCTTAACGAA-GTCTGCATT 681
>seq51722
Length=1631
Score = 138 bits (152), Expect = 3e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || ||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 170 TCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAA 229
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | || || || || ||||| || || ||||| || || || || ||||||||||
Sbjct 230 TGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAAT 289
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||| || || ||||| ||||| || || || ||||| || || || ||
Sbjct 290 TCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTC 349
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || ||||||||||| || | |||||| ||||| | ||||||
Sbjct 350 CAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 120 bits (132), Expect = 7e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || || || ||||| || || |||| ||||||||| |||||||| ||
Sbjct 540 TTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTG 599
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| ||||| ||||| ||||| || ||||||||||||||| || ||||| || |||
Sbjct 600 GCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGTG 659
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|||||||| || || | |||||||
Sbjct 660 AGAGTCTTAACGAAGATCTGCATT 683
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||| || || | | |||||| || ||||||| ||||| || ||||||||||| |
Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| || || |||||||| ||||| ||||||||||| || ||||| || |||
Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966
Query 211095 GTCTTTACAAACACCTGCATT 211115
||||| ||||| | |||||||
Sbjct 967 GTCTTCACAAAGATCTGCATT 987
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| || ||||| | || || || |||||||||| || ||||| |||||||| || |
Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||| || || |||||||| ||| || ||||| || || ||||| || ||||||
Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| || || | ||||||
Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629
>seq48601
Length=1711
Score = 120 bits (132), Expect = 7e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||||||||||||||| ||||| || || | ||||||||||||||||| ||
Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| ||||||||||||||||| ||| ||| ||||| || ||||| ||||| || || ||
Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || || || | ||||||
Sbjct 121 GTTTTGACGAAAATTTGCATT 101
Score = 113 bits (124), Expect = 1e-19
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| || ||||| || |||||||||| |||||||||||| ||||||||
Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||||| || || |||||||| || ||| || ||||| || || || || || ||
Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270
Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115
|| ||||| ||||| | |||||||
Sbjct 1269 CAGTGTCTTCACAAAGATCTGCATT 1245
>seq150301
Length=587
Score = 113 bits (124), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049
|| ||||| ||||| || | ||||||||||||||| || ||| |||||| ||||| ||
Sbjct 500 CGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCTTTCACATTTTCAATT 441
Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109
|| || ||| ||| ||||| || |||||||||||||| || || || |||||||| | |
Sbjct 440 GTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGCGTTTTTACAAAGATC 381
Query 211110 TGCAT 211114
|||||
Sbjct 380 TGCAT 376
>seq52966
Length=1601
Score = 111 bits (122), Expect = 4e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||||||||| ||||| ||||| ||||||| || || ||||| ||||||||
Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| ||||| || ||||| || || |||||||| || || ||||| ||||| |||
Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || ||||| | ||||||
Sbjct 1003 GTTTTCACAAAGATTTGCATT 983
>seq75105
Length=1195
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||||||||| | |||||||| || |||| |||||||||||||||||||| |
Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| || || ||||| ||||| |||||||| | ||||| || || || || |
Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || || || | |||||||
Sbjct 935 GTTTTCACGAAAATCTGCATT 915
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| || | || || || || |||| ||||||||||| |||||||||
Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTT 680
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || || || || ||||| || || || || |||||||| |||||||| ||
Sbjct 679 GCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGTC 620
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|| ||||| ||||| | ||||||
Sbjct 619 AGCGTCTTCACAAAGATTTGCATT 596
>seq150799
Length=584
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||||||||| | || ||||| || |||| |||||||||||||||||||| |
Sbjct 444 CCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 385
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| || || ||||| ||||| |||||||| | ||||| || || || || |
Sbjct 384 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 325
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || || || | |||||||
Sbjct 324 GTTTTCACGAAAATCTGCATT 304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1156667172948150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |