Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq48601 123 6e-23 seq52966 111 4e-19 seq75105 105 2e-17 seq150799 102 2e-16 seq133353 96.9 8e-15 seq150301 89.7 1e-12 >seq48601 Length=1711 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| ||||| ||||| ||||| || ||||||||||| ||||| || | Sbjct 241 CCGGCGAAGATAAGGCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATTTTGGCC 182 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || ||||||||||||||||| ||| || || | ||||| |||||||| |||| Sbjct 181 TTTACGTTTTCGATGGTGTCTGAGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGT 122 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | ||||||| Sbjct 121 GTTTTGACGAAAATTTGCATT 101 Score = 100 bits (110), Expect = 7e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || |||||||||||||| || || || |||||||| ||||||||||| ||||| Sbjct 541 CTTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTT 482 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||| || ||||| | || || || | ||||| ||||| || || Sbjct 481 AGCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGT 422 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||| | |||||| Sbjct 421 CAACGTCTTCACGAAGATCTGCATT 397 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| || ||||| || || || ||||| |||||||||||||||||||| Sbjct 1389 CTTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTT 1330 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| || |||||||| || | ||| || || | || || || || || || Sbjct 1329 AGCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGT 1270 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 || || || | || | |||||| Sbjct 1269 CAGTGTCTTCACAAAGATCTGCATT 1245 >seq52966 Length=1601 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||| ||||| ||||| || |||||||| || |||||||||||||| | Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||| || ||||| || | || || || | || || ||||| ||||| | | Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | || | ||||||| Sbjct 1003 GTTTTCACAAAGATTTGCATT 983 >seq75105 Length=1195 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct 1055 CCGGCGAAGATAAGTCTCTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 996 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || ||||| || || | || || || || ||||| || || || ||||| Sbjct 995 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 936 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | |||||| Sbjct 935 GTTTTCACGAAAATCTGCATT 915 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||||||||| || || || || ||||| |||||||| || || || || | Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || || ||||| || | ||| || || |||||||| ||||| || |||| | Sbjct 372 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 313 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 312 GTCTTCACGAAGATTTGCATT 292 >seq150799 Length=584 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 444 CCGGCGAAGATAAGTCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCT 385 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || ||||| || || | || || || || ||||| || || || ||||| Sbjct 384 TTCACATTCTCAATGGTATCAGAAGCCTCAACCTCCAAGGTGATTGTTTTCCCAGTCAAT 325 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | |||||| Sbjct 324 GTTTTCACGAAAATCTGCATT 304 >seq133353 Length=689 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||||||||| || || || || ||||| |||||||| || || || || | Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || || ||||| || | ||| || || |||||||| ||||| || |||| | Sbjct 319 TTCACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAGA 378 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 379 GTCTTCACGAAGATTTGCATT 399 >seq150301 Length=587 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || | ||| ||||| || || || || ||||||||||| || || |||||| Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAAT-TTTTGC 457 Query 225634 TT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || |||| ||| || || || |||| |||||| || | ||||||||||| || || | Sbjct 456 TTTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAG 397 Query 225693 AGTTTTTATGAACACTTGCAT 225713 ||||||| || | ||||| Sbjct 396 CGTTTTTACAAAGATCTGCAT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189974819313140