Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq76979 104 3e-17 seq6785 87.8 2e-12 >seq76979 Length=1169 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 77060 ATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119 |||||| ||||| |||| |||||| ||| ||| || || | || | ||||| || Sbjct 1135 ATTCTTCATATCCTCATCCCACAAGTTCAACTCGACCAAGTCTTTCAGCAAGTGAGGGTT 1076 Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 ||| ||||| || || ||||| | ||| || || |||| || || || || || || Sbjct 1075 AACAATTTGGAAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTGTAGGGCTC 1016 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236 | ||||||||||| || | ||||| || |||||||| |||||||| |||||||| Sbjct 1015 AATGGATTCATTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGTGCCAC 959 >seq6785 Length=5584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 78765 TTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTA 78824 ||||| | || |||||||| || | ||||| || |||||||||||||||||||| ||| Sbjct 4106 TTGTGCAAGTTTGATACAGCAATACGAGCAGCGAGGATAGCATAATCAGGATGTTGAGTA 4047 Query 78825 GTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTA 78884 || | || || ||||||| || || | || ||||||| |||| || || || Sbjct 4046 GTCATTGATGCAGCAGTTTCTGCAGCCAAGTTGTCCAACTCTACTGTTGAAACACCTTTG 3987 Query 78885 TATAGTCCTTGAATAACTTTCATGGC 78910 || | |||| ||| |||||||| || Sbjct 3986 TACAATCCTCCAATTACTTTCATAGC 3961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693215987038400