Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq76979 104 3e-17
seq6785 87.8 2e-12
>seq76979
Length=1169
Score = 104 bits (114), Expect = 3e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 77060 ATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119
|||||| ||||| |||| |||||| ||| ||| || || | || | ||||| ||
Sbjct 1135 ATTCTTCATATCCTCATCCCACAAGTTCAACTCGACCAAGTCTTTCAGCAAGTGAGGGTT 1076
Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179
||| ||||| || || ||||| | ||| || || |||| || || || || || ||
Sbjct 1075 AACAATTTGGAAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTGTAGGGCTC 1016
Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236
| ||||||||||| || | ||||| || |||||||| |||||||| ||||||||
Sbjct 1015 AATGGATTCATTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGTGCCAC 959
>seq6785
Length=5584
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 78765 TTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTA 78824
||||| | || |||||||| || | ||||| || |||||||||||||||||||| |||
Sbjct 4106 TTGTGCAAGTTTGATACAGCAATACGAGCAGCGAGGATAGCATAATCAGGATGTTGAGTA 4047
Query 78825 GTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTA 78884
|| | || || ||||||| || || | || ||||||| |||| || || ||
Sbjct 4046 GTCATTGATGCAGCAGTTTCTGCAGCCAAGTTGTCCAACTCTACTGTTGAAACACCTTTG 3987
Query 78885 TATAGTCCTTGAATAACTTTCATGGC 78910
|| | |||| ||| |||||||| ||
Sbjct 3986 TACAATCCTCCAATTACTTTCATAGC 3961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693215987038400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |