Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24732 125 1e-23 seq76979 98.7 1e-15 >seq24732 Length=2762 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 |||||| || || |||| |||||| || |||| ||| || | || | ||| || || Sbjct 510 ATTCTTCATATCCTCATCCCACAAGTTCAACTCGACTAAGTCTTTCAGCAAATGTGGGTT 451 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 ||||||||| || || ||||||| |||||| ||| |||| || || || || || || Sbjct 450 AACAATTTGGAAGTCGCCAGACAGTACTCTACGACTGTAGATGTTGAAAGTGTAAGGCTC 391 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 | ||||||||| || || | |||||| || || ||||| || ||||| |||||||| | Sbjct 390 AATAGATTCATTATTGCCAAGAATTTGCGCCGTAGAAGCTGTTGGCATCGGTGCCACAAG 331 Query 75835 TAAACTATTTCTGAGACCATGT 75856 | ||| || | || ||||||| Sbjct 330 AAGACTGTTGCGGACACCATGT 309 >seq76979 Length=1169 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 |||||| || || |||| |||||| || |||| || || | || | ||||| || Sbjct 1135 ATTCTTCATATCCTCATCCCACAAGTTCAACTCGACCAAGTCTTTCAGCAAGTGAGGGTT 1076 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 ||||||||| || || ||||| | ||| ||||| |||| || || || || || || Sbjct 1075 AACAATTTGGAAGTCGCCAGAAAGTACCCTTCGGCTGTAGATGTTGAAAGTGTAGGGCTC 1016 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCAC 75831 | ||||||||||| || | ||||| || || ||||| || ||||| |||||||| Sbjct 1015 AATGGATTCATTGTTGCCAAGGATTTGGGCCGTAGAAGCTGTTGGCATCGGTGCCAC 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711443386819200