Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 154 3e-32
seq51722 154 3e-32
seq48601 147 5e-30
seq75105 127 4e-24
seq52966 120 6e-22
seq150799 111 3e-19
seq150301 95.1 3e-14
>seq54088
Length=1574
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || || || | ||| || |||||||| || ||||| |
Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || || ||||| ||||| || || |||||||||| || || || ||| |||
Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| ||||| ||||| || || || | || ||||||||||| || || |||
Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || || |||||||| || ||||||||||| || || || ||||||
Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397
Score = 114 bits (126), Expect = 3e-20
Identities = 113/145 (78%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || ||||| |||| || ||||| || ||||| || |||||||| ||||| ||
Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||||||| | ||||| ||||| || ||||| || |||||||| || ||| | || ||
Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
| |||||||||||| ||||||||
Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681
>seq51722
Length=1631
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || ||||| || || || | ||| || |||||||| || ||||| |
Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || || ||||| ||||| || || |||||||||| || || || ||| |||
Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| ||||| ||||| || || || | || ||||||||||| || || |||
Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || || |||||||| || ||||||||||| || || || ||||||
Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||||||||| || || || ||| ||||| |||||||| || ||||| || |||
Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | || || ||||| || |||||||||||||| || || ||||| || || | |
Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629
Score = 122 bits (134), Expect = 2e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || ||||| |||| || ||||| || ||||| || ||||| || ||||| ||
Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||||||| | ||||| ||||| || ||||| || |||||||| || ||||| || ||
Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
| |||||||||||| |||||||||
Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||| | |||||| || ||||| || || || || |||||||| |||
Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | || || ||||| || || || |||||||||||||| || || || || | |
Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||| || || |||||||||
Sbjct 967 GTCTTCACAAAGATCTGCATT 987
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || || || || | || || ||||| || || |||||||| ||||| || |||
Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || || | || ||||| ||||| ||||||||||| || || || || || || ||
Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGTG 1262
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| |||||| |||||||| ||||||
Sbjct 1263 AGAGTCTTGACGAATATTTGCATT 1286
>seq48601
Length=1711
Score = 147 bits (162), Expect = 5e-30
Identities = 119/144 (83%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| ||||||||||| | ||||| || ||| |||||||||||||||||||| |||||
Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||||||| | ||||| || || ||||| ||||||||||| ||||| ||||| || |||
Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
|| ||||| ||||| |||||||||
Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| | |||||| || ||| ||||| || |||||||||||||||||
Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|| || || | || || ||||||||||||||||||||||| || || || || || |||
Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||| || || |||||||||
Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
|| || || || ||||||||||| || ||||| ||| | || || ||||| ||||| ||
Sbjct 1702 GGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCTGAAGCCTCA 1643
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| | ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct 1642 ACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593
>seq75105
Length=1195
Score = 127 bits (140), Expect = 4e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| ||||||||||| | | || || || ||||| || |||||||||||||||||
Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||||||| | || |||||||||||||| || ||||| |||||||| ||||| || ||
Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
|| ||||| || || || ||||||
Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596
>seq52966
Length=1601
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | |||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || |||||||||||||| ||||| ||||| || || ||||| ||||| | |
Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004
Query 283080 GTCTTAACGAATATCTGCATT 283100
|| || || || || ||||||
Sbjct 1003 GTTTTCACAAAGATTTGCATT 983
>seq150799
Length=584
Score = 111 bits (122), Expect = 3e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| ||||||||||| | | || || || ||||| || |||||||||||||||||
Sbjct 129 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 70
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||||||| | || |||||||||||||| || ||||| || ||||| ||||| || ||
Sbjct 69 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGT 10
Query 283076 CAAAGTCTT 283084
|| |||||
Sbjct 9 CAGCGTCTT 1
>seq150301
Length=587
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||| || ||||| ||| || || || |||||||| || || ||||||
Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || ||||| ||||| || || || ||||||||||| || || |
Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || || || ||||||||
Sbjct 395 GTTTTTACAAAGATCTGCAT 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1044495347700740
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