Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq54088 154 3e-32 seq51722 154 3e-32 seq48601 147 5e-30 seq75105 127 4e-24 seq52966 120 6e-22 seq150799 111 3e-19 seq150301 95.1 3e-14 >seq54088 Length=1574 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | ||| || |||||||| || ||||| | Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| ||||| || || |||||||||| || || || ||| ||| Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| || || || | || ||||||||||| || || ||| Sbjct 290 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 349 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || |||||||| || ||||||||||| || || || |||||| Sbjct 350 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 397 Score = 114 bits (126), Expect = 3e-20 Identities = 113/145 (78%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| |||| || ||||| || ||||| || |||||||| ||||| || Sbjct 538 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTT 597 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||| | ||||| ||||| || ||||| || |||||||| || ||| | || || Sbjct 598 GGCTTTTACGTTTTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCCTGCCAGT 657 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| |||||||| Sbjct 658 GAGAGTCTTAACGAA-GTCTGCATT 681 >seq51722 Length=1631 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | ||| || |||||||| || ||||| | Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| ||||| || || |||||||||| || || || ||| ||| Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| || || || | || ||||||||||| || || ||| Sbjct 288 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACT 347 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || |||||||| || ||||||||||| || || || |||||| Sbjct 348 TCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 395 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||||||||| || || || ||| ||||| |||||||| || ||||| || ||| Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGATTTTAGCT 1549 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| || |||||||||||||| || || ||||| || || | | Sbjct 1550 TTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAGA 1609 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 1610 GTCTTGACGAAAATCTGCAT 1629 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || ||||| |||| || ||||| || ||||| || ||||| || ||||| || Sbjct 539 TTTACCAGCAAAAATCAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTT 598 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||| | ||||| ||||| || ||||| || |||||||| || ||||| || || Sbjct 599 GGCTTTTACGTTCTCGATTGTGTCGGATGCTTCAACCTCGAGAGTAATAGTCTTGCCAGT 658 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| ||||||||| Sbjct 659 GAGAGTCTTAACGAAGATCTGCATT 683 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||| | |||||| || ||||| || || || || |||||||| ||| Sbjct 847 CCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATCCCTTCTTTATCCTGGATCTTGGCT 906 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| || || || |||||||||||||| || || || || | | Sbjct 907 TTGACGTTCTCAATTGTGTCAGATGCCTCAACTTCGAGAGTGATTGTTTTTCCAGTAAGA 966 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || ||||||||| Sbjct 967 GTCTTCACAAAGATCTGCATT 987 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || || | || || ||||| || || |||||||| ||||| || ||| Sbjct 1143 TTACCAGCGAAAATAAGTCGCTGCTGGTCTGGAGGGATTCCCTCCTTATCTTGAATTTTT 1202 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || ||||| ||||| ||||||||||| || || || || || || || Sbjct 1203 GCCTTAACATTTTCAATAGTATCCGATGCTTCGACTTCAAGGGTAATTGTTTTGCCAGTG 1262 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||| |||||||| |||||| Sbjct 1263 AGAGTCTTGACGAATATTTGCATT 1286 >seq48601 Length=1711 Score = 147 bits (162), Expect = 5e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| | ||||| || ||| |||||||||||||||||||| ||||| Sbjct 540 TTACCGGCAAAGATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTGTCTTGAATCTTA 481 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||||||| | ||||| || || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 480 GCTTTTACATTTTCGATTGTATCTGAAGCCTCGACTTCGAGTGTGATAGTCTTTCCTGTC 421 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || ||||| ||||| ||||||||| Sbjct 420 AACGTCTTCACGAAGATCTGCATT 397 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| | |||||| || ||| ||||| || ||||||||||||||||| Sbjct 1388 TTACCAGCAAAGATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTA 1329 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || ||||||||||||||||||||||| || || || || || ||| Sbjct 1328 GCCTTCACATTCTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTTTTCCCTGTC 1269 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| || || ||||||||| Sbjct 1268 AGTGTCTTCACAAAGATCTGCATT 1245 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || || ||||||||||| || ||||| ||| | || || ||||| ||||| || Sbjct 1702 GGGATGCCTTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCAATGGTGTCTGAAGCCTCA 1643 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 1642 ACTTCCAAGGTGATAGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCAT 1593 >seq75105 Length=1195 Score = 127 bits (140), Expect = 4e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| ||||||||||| | | || || || ||||| || ||||||||||||||||| Sbjct 740 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 681 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||| | || |||||||||||||| || ||||| |||||||| ||||| || || Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || |||||| Sbjct 620 CAGCGTCTTCACAAAGATTTGCATT 596 >seq52966 Length=1601 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | |||||| ||||| ||||||||||| |||||||||||||| || Sbjct 1123 CCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCC 1064 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || |||||||||||||| ||||| ||||| || || ||||| ||||| | | Sbjct 1063 TTCACATTTTCTATAGTGTCCGAAGCCTCGACCTCGAGGGTAATAGTCTTCCCCGTAAGA 1004 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || || || || |||||| Sbjct 1003 GTTTTCACAAAGATTTGCATT 983 >seq150799 Length=584 Score = 111 bits (122), Expect = 3e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| ||||||||||| | | || || || ||||| || ||||||||||||||||| Sbjct 129 TTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 70 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||| | || |||||||||||||| || ||||| || ||||| ||||| || || Sbjct 69 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGGGTGATGGTCTTTCCAGT 10 Query 283076 CAAAGTCTT 283084 || ||||| Sbjct 9 CAGCGTCTT 1 >seq150301 Length=587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||| || ||||| ||| || || || |||||||| || || |||||| Sbjct 515 CCAGCAAAAATCAATCGCTGTTGATCAGGTGGGATTCCTTCCTTGTCCTGAATTTTTGCT 456 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || ||||| ||||| || || || ||||||||||| || || | Sbjct 455 TTCACATTTTCAATTGTATCCGAGGCTTCCACCTCAAGGGTGATCGTCTTTCCAGTAAGC 396 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || || || |||||||| Sbjct 395 GTTTTTACAAAGATCTGCAT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044495347700740