Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 107 1e-18
seq51722 107 1e-18
seq133353 95.1 9e-15
seq75105 95.1 9e-15
>seq54088
Length=1574
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||||||||| |||||||||||| || || |||| | | || |||| ||
Sbjct 188 ACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCG 247
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||| ||||||||||| | ||| | || ||||| ||
Sbjct 248 AGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGA 307
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||| | | || || |||| || |||||||||
Sbjct 308 ATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTT 367
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| || || ||||||||
Sbjct 368 CCAGTCAAAGTCTTGACAAAAATTTGCAT 396
>seq51722
Length=1631
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||||||||| |||||||||||| || || |||| | | || |||| ||
Sbjct 186 ACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGACAATGTACGACCGTCCTCG 245
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||| ||||||||||| | ||| | || ||||| ||
Sbjct 246 AGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGAATTCCCTCCTTATCTTGA 305
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | || ||||| | | || || |||| || |||||||||
Sbjct 306 ATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTACTTCCAGGGTTATCGTCTTT 365
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| || || ||||||||
Sbjct 366 CCAGTCAAAGTCTTGACAAAAATTTGCAT 394
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|||||||||||||| ||||||||||| | ||| | || ||||| ||| || || ||
Sbjct 1490 CCGGCAAAGATCAATCGCTGCTGATCAGGAGGAATCCCCTCCTTATCCTGGAT-TTTAGC 1548
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
|| | |||| |||| ||||| | | ||| || || | ||| || ||||| || |||||
Sbjct 1549 TTTGACGTTCTCTATTGTGTCAGATGCTTCGACTTCGAGCGTTATGGTCTTCCCGGTGAG 1608
Query 44317 GGTCTTCACGAAGATTTGCAT 44337
||||| ||||| || |||||
Sbjct 1609 AGTCTTGACGAAAATCTGCAT 1629
>seq133353
Length=689
Score = 95.1 bits (104), Expect = 9e-15
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| |||||||| | ||||||||||| | || | |||||||| ||| || || |
Sbjct 259 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 318
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
||| | |||| | || ||||||| | ||| || |||| ||| || |||||||| || ||
Sbjct 319 TTC-ACGTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAG 377
Query 44317 GGTCTTCACGAAGATTTGCAT 44337
||||||||||||||||||||
Sbjct 378 AGTCTTCACGAAGATTTGCAT 398
>seq75105
Length=1195
Score = 95.1 bits (104), Expect = 9e-15
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| |||||||| | ||||||||||| | || | |||||||| ||| || || |
Sbjct 432 CCAGCAAAGATAAGTCGCTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATTTTGGCC 373
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
|||| |||| | || ||||||| | ||| || |||| ||| || |||||||| || ||
Sbjct 372 TTCAC-GTTCTCAATCGTGTCGGACGCTTCAACTTCCAACGTGATTGTCTTTCCAGTCAG 314
Query 44317 GGTCTTCACGAAGATTTGCAT 44337
||||||||||||||||||||
Sbjct 313 AGTCTTCACGAAGATTTGCAT 293
Score = 82.4 bits (90), Expect = 5e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254
|| ||||||||||| | | ||||||||||| || | |||||||| || |||||
Sbjct 739 TTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTT- 681
Query 44255 TGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
||||| | ||| | || ||||| | | ||||| || | || || |||||||| ||
Sbjct 680 TGCTTTTACATTCTCAATAGTGTCCGAAGCCTCCACTTCAAGAGTGATGGTCTTTCCAGT 621
Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||||| |||||||||||
Sbjct 620 CAGCGTCTTCACAAAGATTTGCAT 597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359256346950270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |