Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq48601 140 8e-28 seq150799 113 1e-19 seq75105 107 5e-18 seq52966 107 5e-18 seq150301 104 6e-17 seq133353 104 6e-17 seq51722 104 6e-17 >seq48601 Length=1711 Score = 140 bits (154), Expect = 8e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || |||||||| ||||| ||| ||||||| Sbjct 105 CAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTCAGAC 164 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || || |||||||| ||||| ||||| || ||||||||| Sbjct 165 ACCATCGAAAACGTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACCAGCAA 224 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||||||||| Sbjct 225 CGCCTTATCTTCGCCGG 241 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | |||||||| || ||||| ||||| || || ||||| Sbjct 401 CAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTCAGAT 460 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| |||||||| ||||| || || || || || || |||||| Sbjct 461 ACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAA 520 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||||||||| ||||| || Sbjct 521 CGACTTATCTTTGCCGGTAA 540 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || ||||| || ||||| | || || ||| || ||| Sbjct 885 CAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTCTGAC 944 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||||||||| || ||||||||||| || || |||||| Sbjct 945 ACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAGCAA 1004 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || || || || || Sbjct 1005 CGTCTGATTTTTGCTGGTAA 1024 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||| || |||||| | || || || |||||| Sbjct 1596 CAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCTTGGAAGTTGAGGCTTCAGAC 1655 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039 ||||| |||||||| ||| || || || ||||||||||| |||||||| || || Sbjct 1656 ACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 1711 >seq150799 Length=584 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || ||||| |||||| | ||||| || || || Sbjct 308 CAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTCTGAT 367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| |||||||| ||||| || || || |||||||| Sbjct 368 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAG 427 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||||| Sbjct 428 AGACTTATCTTCGCCGG 444 >seq75105 Length=1195 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || || ||||| |||||| | ||||| || || || Sbjct 919 CAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTCTGAT 978 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| |||||||| ||||| || || || ||||| || Sbjct 979 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAACAG 1038 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||||| Sbjct 1039 AGACTTATCTTCGCCGG 1055 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||||| || ||||| || ||||| | || || ||| || ||| Sbjct 296 CAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCCGAC 355 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || |||||||| || ||||| || || ||||| ||||| Sbjct 356 ACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAG 415 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 416 CGACTTATCTTTGCTGG 432 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||||||||| |||||||| ||| || || || ||||||||||| |||||||| || Sbjct 9 TCAGACACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGAT 68 Query 178038 CAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| |||||||| || || || || Sbjct 69 CAGCAGCGACTTATTTTTGCGGGTAA 94 >seq52966 Length=1601 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || || || || ||||||||||| || || ||| Sbjct 987 CAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTTCGGAC 1046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || |||||||| || || ||||| ||||||||| Sbjct 1047 ACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAA 1106 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 1107 CGTCTTATCTTCGCTGG 1123 >seq150301 Length=587 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || ||||| ||||||||||| ||||||||| ||| || Sbjct 379 CAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCGGAT 438 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||||||||| ||||||||||| || || || || Sbjct 439 ACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAACAG 498 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 499 CGATTGATTTTTGCTGG 515 >seq133353 Length=689 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||||| || ||||| || ||||| | || || ||| || ||| Sbjct 395 CAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCCGAC 336 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || |||||||| || ||||| || || ||||| ||||| Sbjct 335 ACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAG 276 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| || || Sbjct 275 CGACTTATCTTTGCTGG 259 >seq51722 Length=1631 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || ||||| || ||||| || || ||| || || Sbjct 1282 CAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATCGGAT 1223 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| || || || ||||||||||| |||||||| Sbjct 1222 ACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCAGCAG 1163 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||| ||||| || || Sbjct 1162 CGACTTATTTTCGCTGGTAA 1143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || |||||||| ||||| ||||| || || || ||| Sbjct 983 CAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATCTGAC 924 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| ||||| ||||| |||||||| || ||||| || || ||| Sbjct 923 ACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAACAA 864 Query 178044 CGACTTATCTTCGCCGG 178060 || | || || || || Sbjct 863 AGATTGATTTTTGCAGG 847 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || || || || ||||| || ||| || ||| Sbjct 1626 CAGATTTTCGTCAAGACTCTCACCGGGAAGACCATAACGCTCGAAGTCGAAGCATCTGAC 1567 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| || || ||||| || || || || ||||| || ||||| Sbjct 1566 ACAATAGAGAACGTCAAAGCTAAAATCCAGGATAAGGAGGGGATTCCTCCTGATCAGCAG 1507 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| ||||| Sbjct 1506 CGATTGATCTTTGCCGG 1490 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || || || |||||||| ||| || ||| Sbjct 679 CAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATCCGAC 620 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| || || ||||| || |||||||| || || || || || Sbjct 619 ACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAACAG 560 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 ||||| || || || || ||| Sbjct 559 CGACTGATTTTTGCTGGTAAA 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201150810328140