Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq48601 140 8e-28
seq150799 113 1e-19
seq75105 107 5e-18
seq52966 107 5e-18
seq150301 104 6e-17
seq133353 104 6e-17
seq51722 104 6e-17
>seq48601
Length=1711
Score = 140 bits (154), Expect = 8e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| || || || || || |||||||| ||||| ||| |||||||
Sbjct 105 CAAATTTTCGTCAAAACACTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCTCAGAC 164
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || || || |||||||| ||||| ||||| || |||||||||
Sbjct 165 ACCATCGAAAACGTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCGCCAGACCAGCAA 224
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||||||||||||
Sbjct 225 CGCCTTATCTTCGCCGG 241
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | |||||||| || ||||| ||||| || || |||||
Sbjct 401 CAGATCTTCGTGAAGACGTTGACAGGAAAGACTATCACACTCGAAGTCGAGGCTTCAGAT 460
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| |||||||| ||||| || || || || || || ||||||
Sbjct 461 ACAATCGAAAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAA 520
Query 178044 CGACTTATCTTCGCCGGAAA 178063
||||||||||| ||||| ||
Sbjct 521 CGACTTATCTTTGCCGGTAA 540
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| | || ||||| || ||||| | || || ||| || |||
Sbjct 885 CAGATCTTCGTGAAAACGTTGACTGGAAAGACCATCACTTTGGAAGTTGAAGCTTCTGAC 944
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||||||||| || ||||||||||| || || ||||||
Sbjct 945 ACGATCGAGAACGTAAAGGCTAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAGCAA 1004
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| || || || || || ||
Sbjct 1005 CGTCTGATTTTTGCTGGTAA 1024
Score = 93.3 bits (102), Expect = 1e-13
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||| | || ||||| || |||||| | || || || ||||||
Sbjct 1596 CAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCTTGGAAGTTGAGGCTTCAGAC 1655
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039
||||| |||||||| ||| || || || ||||||||||| |||||||| || ||
Sbjct 1656 ACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 1711
>seq150799
Length=584
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| | || || ||||| |||||| | ||||| || || ||
Sbjct 308 CAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTCTGAT 367
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || ||| ||||| |||||||| ||||| || || || ||||||||
Sbjct 368 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAG 427
Query 178044 CGACTTATCTTCGCCGG 178060
||||||||||||||||
Sbjct 428 AGACTTATCTTCGCCGG 444
>seq75105
Length=1195
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| | || || ||||| |||||| | ||||| || || ||
Sbjct 919 CAGATTTTCGTGAAAACATTGACTGGGAAAACAATCACCTTGGAGGTTGAGGCTTCTGAT 978
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || ||| ||||| |||||||| ||||| || || || ||||| ||
Sbjct 979 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAACAG 1038
Query 178044 CGACTTATCTTCGCCGG 178060
||||||||||||||||
Sbjct 1039 AGACTTATCTTCGCCGG 1055
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||||| || ||||| || ||||| | || || ||| || |||
Sbjct 296 CAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCCGAC 355
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || || |||||||| || ||||| || || ||||| |||||
Sbjct 356 ACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAG 415
Query 178044 CGACTTATCTTCGCCGG 178060
||||||||||| || ||
Sbjct 416 CGACTTATCTTTGCTGG 432
Score = 84.2 bits (92), Expect = 5e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
||||||||||| |||||||| ||| || || || ||||||||||| |||||||| ||
Sbjct 9 TCAGACACCATTGAGAACGTGAAAGCTAAAATCCAAGACAAAGAAGGCATCCCTCCAGAT 68
Query 178038 CAGCAACGACTTATCTTCGCCGGAAA 178063
||||| |||||||| || || || ||
Sbjct 69 CAGCAGCGACTTATTTTTGCGGGTAA 94
>seq52966
Length=1601
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||||||||| || || || || || ||||||||||| || || |||
Sbjct 987 CAAATCTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAGGTCGAGGCTTCGGAC 1046
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| || |||||||| || || ||||| |||||||||
Sbjct 1047 ACTATAGAAAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAA 1106
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||||||||| ||
Sbjct 1107 CGTCTTATCTTCGCTGG 1123
>seq150301
Length=587
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| || || ||||| ||||||||||| ||||||||| ||| ||
Sbjct 379 CAGATCTTTGTAAAAACGCTTACTGGAAAGACGATCACCCTTGAGGTGGAAGCCTCGGAT 438
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| ||| ||||||||||| ||||||||||| || || || ||
Sbjct 439 ACAATTGAAAATGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAACAG 498
Query 178044 CGACTTATCTTCGCCGG 178060
||| | || || || ||
Sbjct 499 CGATTGATTTTTGCTGG 515
>seq133353
Length=689
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||||| || ||||| || ||||| | || || ||| || |||
Sbjct 395 CAAATCTTCGTGAAGACTCTGACTGGAAAGACAATCACGTTGGAAGTTGAAGCGTCCGAC 336
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || || |||||||| || ||||| || || ||||| |||||
Sbjct 335 ACGATTGAGAACGTGAAGGCCAAAATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAG 276
Query 178044 CGACTTATCTTCGCCGG 178060
||||||||||| || ||
Sbjct 275 CGACTTATCTTTGCTGG 259
>seq51722
Length=1631
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || |||||||| || ||||| || ||||| || || ||| || ||
Sbjct 1282 CAAATATTCGTCAAGACTCTCACTGGCAAAACAATTACCCTTGAAGTCGAAGCATCGGAT 1223
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||| ||||| || || || ||||||||||| ||||||||
Sbjct 1222 ACTATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGAATCCCTCCAGACCAGCAG 1163
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|||||||| ||||| || ||
Sbjct 1162 CGACTTATTTTCGCTGGTAA 1143
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| ||||| || |||||||| ||||| ||||| || || || |||
Sbjct 983 CAGATCTTTGTGAAGACTCTTACTGGAAAAACAATCACTCTCGAAGTTGAGGCATCTGAC 924
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||||||| ||||| ||||| |||||||| || ||||| || || |||
Sbjct 923 ACAATTGAGAACGTCAAAGCCAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAACAA 864
Query 178044 CGACTTATCTTCGCCGG 178060
|| | || || || ||
Sbjct 863 AGATTGATTTTTGCAGG 847
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || |||||||| || || || || || ||||| || ||| || |||
Sbjct 1626 CAGATTTTCGTCAAGACTCTCACCGGGAAGACCATAACGCTCGAAGTCGAAGCATCTGAC 1567
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||||||| || || ||||| || || || || ||||| || |||||
Sbjct 1566 ACAATAGAGAACGTCAAAGCTAAAATCCAGGATAAGGAGGGGATTCCTCCTGATCAGCAG 1507
Query 178044 CGACTTATCTTCGCCGG 178060
||| | ||||| |||||
Sbjct 1506 CGATTGATCTTTGCCGG 1490
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || || || |||||||| ||| || |||
Sbjct 679 CAGATCTTCGTTAAGACTCTCACTGGCAAGACTATTACTCTCGAGGTTGAAGCATCCGAC 620
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| ||| || || ||||| || |||||||| || || || || ||
Sbjct 619 ACAATCGAGAACGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAACAG 560
Query 178044 CGACTTATCTTCGCCGGAAAA 178064
||||| || || || || |||
Sbjct 559 CGACTGATTTTTGCTGGTAAA 539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1201150810328140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |