Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq54088 102 8e-17
seq51722 102 8e-17
>seq54088
Length=1574
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || ||||| |||||| || || |||||||||||
Sbjct 170 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 229
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || |||| ||||| ||||| || || || ||||| ||||| || || | |||
Sbjct 230 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 289
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | ||| | || | ||||| | | |||||| || ||| ||
Sbjct 290 ATTCCCTCCTTAT-CTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTAC 348
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| |||||||| || || |||| ||||| || ||||| |||||
Sbjct 349 TTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 396
>seq51722
Length=1631
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || ||||| |||||| || || |||||||||||
Sbjct 168 CCTCCACGAAGACGAAGAACAAGGTGAAGCGTTGACTCCTTTTGGATATTATAGTCGGAC 227
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || |||| ||||| ||||| || || || ||||| ||||| || || | |||
Sbjct 228 AATGTACGACCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCAGGAGGA 287
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | ||| | || | ||||| | | |||||| || ||| ||
Sbjct 288 ATTCCCTCCTTAT-CTTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGACGCCTCTAC 346
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| |||||||| || || |||| ||||| || ||||| |||||
Sbjct 347 TTCCAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461337148972000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |