Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1891 136 4e-27 seq14012 104 2e-17 seq4940 104 2e-17 >seq1891 Length=13189 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || ||||| ||||| ||||||||| | || || ||||||| | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | || || | ||||| || ||||| ||| | ||||| Sbjct 9387 GACACTATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 9329 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | || | || || || ||| |||| |||| || || || |||||||| Sbjct 9328 ACAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTACAA 9269 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || ||||| ||| | || || | || ||| Sbjct 9268 CATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGGC 9220 Score = 129 bits (142), Expect = 6e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || ||||| ||||| ||||||||| | || || ||||||| | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | || || | ||||| || ||||| ||| | ||||| Sbjct 8059 GACACTATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 8001 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | || | || || || ||| | || |||| || || || |||||||| Sbjct 8000 ACAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAA 7941 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTG 40923 ||||||||||||| |||| || ||| | ||| | || || | || || | |||| Sbjct 7940 CATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGGAGCCTTG 7886 >seq14012 Length=40231 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| || ||||| || || || || |||||||| || || || ||| |||| Sbjct 2158 GAGCCGCTTCTACGCGAAAATCCAAATCGCTTTGTGATTTTTCCGATCCAGTACTGGGAC 2099 Query 116636 ATGTGGCGCATGT-ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| |||| | |||| ||||| | || || | ||| |||||||||||||| || Sbjct 2098 ATTTGG-GCATTTTACAAGAAGGCTGTAGCATCTATTTGGGTGGTCGAGGAGGTGGATCT 2040 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| ||||| | || ||| | | ||| |||| ||||| ||| |||| | Sbjct 2039 TGCCAAAGACACCAAGGATTGGAACAACATGACTGACAGTGAGCGTTTTTTTATCACTCG 1980 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 || || ||||| ||||| || || || |||||||| |||||| |||| Sbjct 1979 TGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATCGTCAATGAGAATTTGGT 1929 >seq4940 Length=754 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| || ||||| || || || || |||||||| || || || ||| |||| Sbjct 654 GAGCCGCTTCTACGCGAAAATCCAAATCGCTTTGTGATTTTTCCGATCCAGTACTGGGAC 595 Query 116636 ATGTGGCGCATGT-ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| |||| | |||| ||||| | || || | ||| |||||||||||||| || Sbjct 594 ATTTGG-GCATTTTACAAGAAGGCTGTAGCATCTATTTGGGTGGTCGAGGAGGTGGATCT 536 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| ||||| | || ||| | | ||| |||| ||||| ||| |||| | Sbjct 535 TGCCAAAGACACCAAGGATTGGAACAACATGACTGACAGTGAGCGTTTTTTTATCACTCG 476 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 || || ||||| ||||| || || || |||||||| |||||| |||| Sbjct 475 TGTTCTCGCCTTCTTCGCTGCTTCTGATGGTATCGTCAATGAGAATTTGGT 425 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 |||||||||||||||||| |||||||| || | ||||| | ||||| || ||||| || Sbjct 380 GGTCGAGCGTTTCGCTCAAGAGGTGCAAGTCCCGGAGGCTAGATGCTTTTATGGCTTCCA 321 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT 116919 |||||||| || ||| | ||||| || ||||| || | | ||||| | ||||| Sbjct 320 AATCGCCATCGAAAACATCCACTCCGAGATGTACTCTAAGTTGATCGAGGCATACGT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515122531997600