Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1891 131 2e-25 seq13295 98.7 1e-15 seq7326 96.9 4e-15 seq4219 95.1 1e-14 seq12874 93.3 5e-14 seq6255 93.3 5e-14 seq2543 93.3 5e-14 seq1304 93.3 5e-14 seq10171 91.5 2e-13 seq8124 82.4 9e-11 >seq1891 Length=13189 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| ||| | |||| |||||| || || ||||| || | Sbjct 9221 CCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAA 9280 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || | ||||||||| || || || | |||||| ||||| | || Sbjct 9281 AGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 9340 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| || ||||| | | | |||||||| | |||||| Sbjct 9341 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACT 9400 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || |||||||||||||||||||| Sbjct 9401 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq13295 Length=8782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 2432 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 2373 Query 60123 CTATACTACCGAGGATTGAATATATAACT 60151 |||||||||||||||| | || ||||| Sbjct 2372 CTATACTACCGAGGATACATTAAGTAACT 2344 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 231 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 290 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 291 CTATACTACCGAGGAT 306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 2063 TTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 2122 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 2123 CTATACTACCGAGGAT 2138 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||||| | ||| | ||||| ||||| |||| Sbjct 804 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGT-ATAGGCGCGGATACTTACCA 746 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 745 CTATACTACCGAGGAT 730 >seq7326 Length=690 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 422 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 481 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 482 CTATACTACCGAGGAT 497 >seq4219 Length=1760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 60052 TTATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||||||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| Sbjct 1643 TTATGAAAAAAGCTAACTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCG 1702 Query 60110 GACATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||||||||||| Sbjct 1703 CGGATACTTACCACTATACTACCGAGGAT 1731 >seq12874 Length=58107 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 57115 AAAAACGTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 57174 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 57175 TTACCACTATACTACCGAGGA 57195 >seq6255 Length=36546 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||| |||| |||| |||||||||||| |||||| | ||||||||||| |||| Sbjct 7609 AAAACTTTCCTCCCCGGCCGGGAATCGAACCTGGGTCTCGCACGTGACAGGCGCGGATAC 7550 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 7549 TTACCACTATACTACCGAGGA 7529 >seq2543 Length=2672 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 60052 TTATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||||||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| Sbjct 1643 TTATGAAAAAAGCTAACTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCG 1702 Query 60110 GACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 1703 CGGATACTTACCACTATACTACCGAGGA 1730 >seq1304 Length=17253 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 576 TTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 635 Query 60123 CTATACTACCGAGGAT 60138 |||||||||||||||| Sbjct 636 CTATACTACCGAGGAT 651 >seq10171 Length=5186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 43039 GCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTT 43098 |||||||||| || || | ||||||||| || | ||| | || |||||||||| ||| | Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCC-TGAATC 583 Query 43099 TTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 43157 || | |||| || | | ||||| || ||||| |||| ||| || || ||||| Sbjct 582 TTGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCA 523 Query 43158 GTTAGCGTCTTTACAAAGATTTGCATT 43184 || || ||||| ||||||||||||||| Sbjct 522 GTCAGTGTCTTGACAAAGATTTGCATT 496 >seq8124 Length=14328 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||| ||||| || |||| ||||||||| | || | || |||||||||| ||| | || Sbjct 8655 TACCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTA 8597 Query 43102 GT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 | |||| || | | ||||| || ||||| |||| ||| || || ||||| || Sbjct 8596 GCCTTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTC 8537 Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184 | ||||| ||||||||||||||| Sbjct 8536 AATGTCTTGACAAAGATTTGCATT 8513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571710312722800