Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq14918 82.4 6e-11 seq10171 82.4 6e-11 seq8124 82.4 6e-11 >seq14918 Length=33047 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || ||||| ||||| ||||| ||||| || || | |||||||||||| ||| || | Sbjct 135 CCTGCGAAAATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGAATCTTAGCC 76 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 ||||| | | | | |||| ||||||| || | ||||| |||||||| |||| Sbjct 75 TTAACGTTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 16 Query 45317 GTCTTCACAAAGATT 45331 ||||| ||||||||| Sbjct 15 GTCTTGACAAAGATT 1 >seq10171 Length=5186 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || ||||| ||||| || || || || | |||||||||||| ||| || Sbjct 639 TTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCTTG 580 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| ||||||| || | ||||| |||||||| ||| Sbjct 579 GCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTC 520 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 519 AGTGTCTTGACAAAGATTTGCAT 497 >seq8124 Length=14328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || ||||| |||| | ||| ||||| ||||| | |||||||||||| ||| || | Sbjct 8653 CCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCC 8594 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | |||| ||||||| || | ||||| |||||||| |||| Sbjct 8593 TTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 8534 Query 45317 GTCTTCACAAAGATTTGCAT 45336 ||||| |||||||||||||| Sbjct 8533 GTCTTGACAAAGATTTGCAT 8514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395002927165210