Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1891 107 2e-18 seq8124 87.8 2e-12 seq8372 84.2 2e-11 >seq1891 Length=13189 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||||||||| || ||||| || |||||| | || || ||| | | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| |||||| | || |||||||||||| | || || ||||| Sbjct 9387 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 9328 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || || || |||||||| ||| ||| | || || ||| Sbjct 9327 CAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTACAAC 9268 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || |||||||| ||| | ||| | || || Sbjct 9267 ATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGG 9221 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || |||||||||||||| || ||||| || |||||| | || || ||| | Sbjct 8120 CATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAG 8061 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||||| |||||| | || |||||||||||| | || || ||||| Sbjct 8060 CGACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 8001 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || || || || ||||| || ||| ||| | || || || Sbjct 8000 ACAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAA 7941 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||| |||| ||| | ||| | || || Sbjct 7940 CATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGG 7893 >seq8124 Length=14328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| |||| || || |||||||| | || || ||| || Sbjct 7941 AATATGCAAATTTTCGTGAAGACTTTGACGGGAAAGACGATCACTCTTGAAGTCGAAGCG 8000 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | |||||| | || ||||||||| || | || || || Sbjct 8001 TCGGACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAT 8060 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| | || || ||||| || Sbjct 8061 CAGCAGCGTTTGATCTTTGCTGGTAA 8086 >seq8372 Length=2112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || |||||||| | || || ||| || Sbjct 1269 AATATGCAAATTTTCGTGAAGACTTTAACGGGAAAGACGATCACTCTTGAAGTCGAAGCG 1328 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | |||||| | || ||||||||| || | || || || Sbjct 1329 TCGGACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAT 1388 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| | || || ||||| || Sbjct 1389 CAGCAGCGTTTGATCTTTGCTGGTAA 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445682763079200