Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1685 129 8e-25 seq7822 84.2 3e-11 >seq1685 Length=49379 Score = 129 bits (142), Expect = 8e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||| | ||||||||| || || | |||||||| |||| ||||||||||||||| Sbjct 5838 TCAAACACATCTCCCCAACAATCATCCAGACCAGGACAATCATGAGGACACATCAATGAC 5779 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAA 72062 ||| | |||| | ||||| ||||||||| ||||| |||||||| | | | || ||| Sbjct 5778 CACATTTGATCAGTCTCTACTCTTTTCATAAAAAGATCGGGAATCCACA-ATCCATAAAA 5720 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || |||||| | || | || || || |||||||||| || || || || |||| Sbjct 5719 TAAATCTCTAGCTCGGTCTTCTTCTGACCCAATATTCTTTTTGAGCTCAAGAAAATCCAT 5660 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 |||||| | |||||| || |||||||| || || Sbjct 5659 AATATCTGCATGCCATGGCTCCAAGTAGATAGC 5627 >seq7822 Length=21803 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 |||| ||||||||||| ||||| || |||| || || || | ||||| || |||||| Sbjct 7471 GTTTGTTTGTGTAGATTGGATACAGCAATTCGAGCTGCAAGCAAAGCATAGTCCGGATGT 7412 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 | ||||| | ||||| | ||| ||||||| | |||||||||||| || || ||| Sbjct 7411 TTAGTAGTCATTGAAGCTGCCACTTCAGCTGCCAAATTGTCCAATTCTATTGTAGTAACT 7352 Query 72898 CCATTATATATTCC 72911 || || || | ||| Sbjct 7351 CCTTTGTAGACTCC 7338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671013277507600