Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3983 179 6e-41 seq6267 158 2e-34 seq13129 136 6e-28 seq9742 127 3e-25 seq13718 114 2e-21 seq12564 113 7e-21 seq1690 107 3e-19 seq7689 102 1e-17 >seq3983 Length=14281 Score = 179 bits (198), Expect = 6e-41 Identities = 204/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || ||||||||||| || ||||||||||| || || Sbjct 5859 CGCCAAACGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 5800 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| ||||||||||||||| |||| || | |||| || |||| Sbjct 5799 CCGCCGTTTGGCTCGTCGAGGTGGAGTCAAGCGTATCTCCGGCCTAATCTACGAGGAGAC 5740 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||| | ||||| ||| ||| |||| ||||||| || ||| || Sbjct 5739 CAGAGGAGTGCTCAAGGTATTCCTTGAGAACGTCATCCGTGATGCTGTCACCTACTGTGA 5680 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||| |||||||| || |||||||| | || || || ||||||||||| || Sbjct 5679 GCATGCCAAACGCAAGACTGTAACTGCCATGGATGTGGTGTACGCCTTGAAACGTCAGGG 5620 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || ||||| || ||||| || || Sbjct 5619 CCGCACTCTCTACGGTTTCGGCGGTTAAACTCCT 5586 >seq6267 Length=7819 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | ||||| ||||||||||| |||||||| ||||| ||| Sbjct 4803 GCCAAACGCCATCGCAAAGTGTTGCGAGACAACATCCAAGGCATCACCAAACCAGCCATC 4862 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| ||||||||||| |||| || | |||| ||||||| Sbjct 4863 CGTCGGTTGGCTCGTCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAAGAGACC 4922 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | || | || || ||| ||| |||| ||||| || ||| ||| Sbjct 4923 AGAGGAGTGCTCAAAGTGTTTCTGGAGAACGTGATCCGAGATGCAGTCACCTACTGTGAG 4982 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||||||||| |||||||| | |||||||| | || ||||||||| Sbjct 4983 CATGCAAAGCGCAAGACTGTCACTGCCATGGATGTGGTCTATGCTCTCAAGCGTCAAGGC 5042 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 5043 CGCACTCTCTACGGTTTCGGCGGTTAA 5069 >seq13129 Length=49174 Score = 136 bits (150), Expect = 6e-28 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||||||||| || || ||||| || ||||| ||||| Sbjct 31508 TCTTCGCGACAACATCCAGGGGATCACCAAGCCTGCGATTCGTCGCCTTGCTCGCCGTGG 31567 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||||||||| | || || | |||| || |||| |||| ||| |||||| || Sbjct 31568 TGGAGTCAAGCGCATTTCGGGCCTCATCTACGAGGAGACACGTGTTGTGCTGAAGACTTT 31627 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||| | |||||| || ||||| |||||||| || || ||||| || Sbjct 31628 CCTTGAGAACGTTATTCGTGATGCAGTCACTTATACTGAGCACGCCAAGCGCAAGACGGT 31687 >seq9742 Length=16325 Score = 127 bits (140), Expect = 3e-25 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 8741 TCTTCGCGACAACATCCAGGGGATCACTAAGCCTGCGATTCGTCGCCTTGCTCGTCGTGG 8682 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| ||||| | || || | |||| || || | |||| ||| |||||| || Sbjct 8681 CGGAGTTAAGCGCATTTCGGGCCTCATCTACGAGGAAACACGTGTTGTGCTGAAGACTTT 8622 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||| | |||||| || |||||||||||||| || || ||||| || Sbjct 8621 CCTTGAGAACGTTATTCGTGATGCAGTCACTTATACCGAGCACGCCAAGCGCAAGACGGT 8562 >seq13718 Length=17852 Score = 114 bits (126), Expect = 2e-21 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| || ||||| || |||||||| || || ||||| ||| ||||||||||||||||| Sbjct 15082 CGAGACAATATCCAGGGCATCACCAAACCGGCCATCCGCCGTTTGGCTCGTCGTGGTGGA 15141 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| || |||| || |||| |||| || | || | || | Sbjct 15142 GTCAAGCGTATCTCTGGTCTGATCTACGAGGAGACACGTGTAGTGCTCAAAAATTTTTTG 15201 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| || || | ||| ||| | ||| || |||||||| || || ||||| || Sbjct 15202 GAGAGTGTGATTCGTGACGCTGTAACCTACACGGAGCACGCCAAGCGCAAGACGGT 15257 >seq12564 Length=4957 Score = 113 bits (124), Expect = 7e-21 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || || ||||| || || || |||||||| ||||||||||| Sbjct 386 TCTGCGCGACAACATCCAGGGTATTACCAAACCTGCAATTCGTCGTCTTGCTCGTCGTGG 327 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| | || || | |||| || |||| ||| || ||||||| || Sbjct 326 CGGTGTCAAGCGTATTTCGGGCCTCATCTACGAGGAGACGCGTAGCGTGTTGAAGACTTT 267 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | |||| | | |||||| | ||||| ||||||||||| || ||||| || Sbjct 266 CCTGGAAAACGTTGTTCGTGATGCCGTTACTTATACTGAGCACGCTAAGCGCAAGACGGT 207 >seq1690 Length=8024 Score = 107 bits (118), Expect = 3e-19 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || ||||||||||| || ||||||||||| || || Sbjct 132 CGCCAAACGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 73 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| ||| |||||||||| ||||||||||||||| |||| || | |||| || |||| Sbjct 72 CCGCCGTTTGGCTCGTCGAGGTGGAGTCAAGCGTATCTCCGGCCTAATCTACGAGGAGA 14 >seq7689 Length=36686 Score = 102 bits (112), Expect = 1e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 18166 GCCAAGCGTCATAGAAAAGTTCTCCGAGACAACATCCAGGGCATCACTAAGCCGGCTATT 18107 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | ||||| || |||||||||||||| | || || ||| | ||||| |||| | Sbjct 18106 CGTCGATTAGCTCGCCGGGGTGGAGTCAAGCGGATTTCCGGCTTGATTTATGAGGAGACT 18047 Query 16553 CGTG 16556 |||| Sbjct 18046 CGTG 18043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061476251930