Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1685 129 7e-25 seq7822 93.3 5e-14 >seq1685 Length=49379 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||| | ||||||||| || |||| |||||||| |||| ||||||||||| ||| Sbjct 5838 TCAAACACATCTCCCCAACAATCATCCAGACCAGGACAATCATGAGGACACATCAATGAC 5779 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAA 63256 ||| | ||| || |||| ||||||||| ||||| |||||||| | | | || ||| Sbjct 5778 CACATTTGATCAGTCTCTACTCTTTTCATAAAAAGATCGGGAATCCACA-ATCCATAAAA 5720 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || |||||| | || | ||| || || |||||||||| || || || || |||| Sbjct 5719 TAAATCTCTAGCTCGGTCTTCTTCTGACCCAATATTCTTTTTGAGCTCAAGAAAATCCAT 5660 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||||| | |||||| || |||||||| || || Sbjct 5659 AATATCTGCATGCCATGGCTCCAAGTAGATAGC 5627 >seq7822 Length=21803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 |||| ||||||||||| ||||| || |||| || || || | ||||| ||||||||| Sbjct 7471 GTTTGTTTGTGTAGATTGGATACAGCAATTCGAGCTGCAAGCAAAGCATAGTCCGGATGT 7412 Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091 | ||||| | ||||| | ||| ||||||| | |||||||||||| || || ||| Sbjct 7411 TTAGTAGTCATTGAAGCTGCCACTTCAGCTGCCAAATTGTCCAATTCTATTGTAGTAACT 7352 Query 64092 CCATTATATATTCCTTGAATAACCTT 64117 || || || | ||| ||| ||||| Sbjct 7351 CCTTTGTAGACTCCCCCAATCACCTT 7326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622830319531600