Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11478 111 1e-19 seq9799 109 4e-19 seq2663 107 1e-18 >seq11478 Length=5940 Score = 111 bits (122), Expect = 1e-19 Identities = 75/84 (89%), Gaps = 5/84 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5720 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5661 Query 25957 TAATCCTTTCATGCGCGTCACTAA 25980 |||||| |||||||||| | |||| Sbjct 5660 TAATCCATTCATGCGCGCCCCTAA 5637 >seq9799 Length=3475 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3256 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3197 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| |||||||||| | ||| Sbjct 3196 TAATCCATTCATGCGCGCCCCTA 3174 >seq2663 Length=10768 Score = 107 bits (118), Expect = 1e-18 Identities = 74/84 (88%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||| Sbjct 7844 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7903 Query 25957 TAATCCTTTCATGCGCGTCACTAA 25980 |||||| |||||||||| | |||| Sbjct 7904 TAATCCATTCATGCGCGCCCCTAA 7927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334885926643310