Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1685 134 2e-26 seq7822 93.3 5e-14 >seq1685 Length=49379 Score = 134 bits (148), Expect = 2e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||| | ||||||||| || ||||| |||||||| |||| ||||||||||| ||| Sbjct 5838 TCAAACACATCTCCCCAACAATCATCCAGACCAGGACAATCATGAGGACACATCAATGAC 5779 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT-AAA 63111 ||| | ||| || |||| ||||||||| ||||| |||||||| | | | || ||| Sbjct 5778 CACATTTGATCAGTCTCTACTCTTTTCATAAAAAGATCGGGAATCCACA-ATCCATAAAA 5720 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || |||||| | || | ||| || || |||||||||| || || || || |||| Sbjct 5719 TAAATCTCTAGCTCGGTCTTCTTCTGACCCAATATTCTTTTTGAGCTCAAGAAAATCCAT 5660 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 |||||| | |||||| || |||||||| || || Sbjct 5659 AATATCTGCATGCCATGGCTCCAAGTAGATAGC 5627 >seq7822 Length=21803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| |||||||||||| ||||| || |||| ||| || || | ||||| ||||||||| Sbjct 7471 GTTTGTTTGTGTAGATTGGATACAGCAATTCGAGCTGCAAGCAAAGCATAGTCCGGATGT 7412 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 | ||||| | ||||| | ||| ||||||| | |||||||||||| || || || Sbjct 7411 TTAGTAGTCATTGAAGCTGCCACTTCAGCTGCCAAATTGTCCAATTCTATTGTAGTAACT 7352 Query 63947 CCATTATATATTCC 63960 || || || | ||| Sbjct 7351 CCTTTGTAGACTCC 7338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513114796000