Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1891 120 3e-22 seq14918 93.3 4e-14 seq8124 89.7 4e-13 seq10171 84.2 2e-11 seq8372 84.2 2e-11 >seq1891 Length=13189 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | ||||| || ||||||| | |||||||| | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | || ||||| ||||| ||||| || || Sbjct 8059 GACACTATCGAAAACGTCA---AAGCCAAGATCCAA-GACAAGGAAGGCATTCCCCCAGA 8004 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||||||||| || || ||||| || | || ||| | || || Sbjct 8003 CCAACAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTA 7944 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| || || || || ||||| || ||||| ||||| | || | |||||| Sbjct 7943 CAACATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGGA 7892 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | ||||| || ||||||| | |||||||| | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | || ||||| ||||| ||||| || || Sbjct 9387 GACACTATCGAAAACGTCA---AAGCCAAGATCCAA-GACAAGGAAGGCATTCCCCCAGA 9332 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||||||||| || || || || || | || ||| | || || Sbjct 9331 CCAACAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTA 9272 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||||| || ||| | ||||| Sbjct 9271 CAACATCCAGAAGGAGTCCACACTCCATCTGGTGCT 9236 >seq14918 Length=33047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || ||| | || || ||||||||||| |||| Sbjct 399 AATGCAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTC 458 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| ||||| |||||| || |||||||| ||||| || ||||| Sbjct 459 TGACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCA 518 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 ||||| | || ||||| || || Sbjct 519 GCAGCGATTGATCTTTGCTGGTAA 542 >seq8124 Length=14328 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| | || || || ||||| |||| || ||| | || || ||||||||||| |||| Sbjct 8917 AATGTAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTC 8976 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| ||||| |||||| || |||||||| ||||| || ||||| Sbjct 8977 TGACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCA 9036 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 ||||| | || ||||| || || Sbjct 9037 GCAGCGATTGATCTTTGCTGGTAA 9060 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| ||||| || || | || || ||||||||||| |||| Sbjct 8513 AATGCAAATCTTTGTCAAGACATTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTC 8572 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | || || || | ||| ||||| || || ||||| || |||| Sbjct 8573 TGACACCATTGAGAATGTCAAGGCTAAGATTCA-GGACAAGGAGGGCATTCCTCCGGACC 8631 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | ||| | | ||||| || || Sbjct 8632 AGCAGAGACTGATTTTCGCAGG 8653 >seq10171 Length=5186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| | || || || ||||||| | || |||||| | || Sbjct 211 AATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATC 270 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 271 TGATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 330 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||| | ||||| || || Sbjct 331 GCAGCGCTTGATTTTCGCAGG 351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| |||| || || | || || ||||||||||| |||| Sbjct 496 AATGCAAATCTTTGTCAAGACACTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTC 555 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| |||||| | || || || | ||| ||||| || || ||||| || || | Sbjct 556 TGACACCATCGAGAACGTCAAGGCCAAGATTCA-GGACAAGGAGGGCATTCCGCCAGATC 614 Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141 | ||||| | || ||||| || || Sbjct 615 AGCAGCGATTGATCTTTGCTGGTAA 639 >seq8372 Length=2112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| | || || || ||||||| | || |||||| | || Sbjct 1849 AATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATC 1908 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 1909 TGATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 1968 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||| | ||||| || || Sbjct 1969 GCAGCGCTTGATTTTCGCAGG 1989 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || ||||||| | || |||||| | ||| Sbjct 1561 ATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATCT 1620 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 1621 GATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAG 1680 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| | ||||| || || Sbjct 1681 CAGCGCTTGATTTTCGCAGG 1700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433248729413150