Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1891 122 7e-23 seq8372 102 7e-17 seq8124 96.9 3e-15 seq1685 95.1 1e-14 >seq1891 Length=13189 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| | ||||||||| ||| | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 8059 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 8000 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||||||||||| ||| || | || || |||||| Sbjct 7999 CAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAAC 7940 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||||| || | || |||| ||||| Sbjct 7939 ATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGG 7893 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | ||||| || || |||| | ||||||||| ||| | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 9387 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 9328 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||||| ||||| ||| || | || || |||||| Sbjct 9327 CAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTACAAC 9268 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | || | || |||| ||||| Sbjct 9267 ATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGG 9221 >seq8372 Length=2112 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || |||||||| || || ||| ||||||||||||| ||| | Sbjct 1269 AATATGCAAATTTTCGTGAAGACTTTAACGGGAAAGACGATCACTCTTGAAGTCGAAGCG 1328 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 1329 TCGGACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAT 1388 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 || || ||| | || ||||| || || Sbjct 1389 CAGCAGCGTTTGATCTTTGCTGGTAA 1414 >seq8124 Length=14328 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || ||||| || || || ||| ||||||||||||| ||| | Sbjct 7941 AATATGCAAATTTTCGTGAAGACTTTGACGGGAAAGACGATCACTCTTGAAGTCGAAGCG 8000 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 8001 TCGGACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAT 8060 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 || || ||| | || ||||| || || Sbjct 8061 CAGCAGCGTTTGATCTTTGCTGGTAA 8086 >seq1685 Length=49379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 128847 ACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTCaa 128906 |||||||| ||||| || | ||| || | || | ||| ||||||||| ||| Sbjct 7363 ACCGCTTT-CCAAGCATGAAAGTGCATAGAAGTACATTTTGCATAGGTGGGTGTTGCCAA 7305 Query 128907 aaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA-CCAA 128965 | | ||| ||||||||||||||||||| ||| | || | ||| |||||||| |||| Sbjct 7304 GTACAAATTCAATGATTGACTTTGATCAACAAAAGCTCCTCTATCAGCAGCCATGTCCAA 7245 Query 128966 TCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTA 129025 | | || |||| |||||||| || ||||||||||||| | | || ||| | Sbjct 7244 T-ATATCTTTCTGAGAAATTTCCCAGACAGTTTTGTAAAGCTTGCGAGTATCTTCTGGGA 7186 Query 129026 TTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGT 129085 | |||| ||| | || || ||| ||||| || || | || ||| ||||| ||| | Sbjct 7185 TCTCTTGAATATGTTGTACAGAGCCATTGTTGGCGATTAGTTGGTTGCGCATTCTTTCAT 7126 Query 129086 TGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGT 129121 ||| ||| || |||| || |||| |||||| Sbjct 7125 CCCACAGATTAAGCTTGACTAATTCGTTTATCAAGT 7090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419651217320650