Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1891 194 3e-44 seq14890 105 1e-17 seq10171 102 2e-16 seq14918 93.3 8e-14 seq10153 89.7 9e-13 seq12305 87.8 3e-12 seq11616 87.8 3e-12 seq8124 87.8 3e-12 seq9888 86.0 1e-11 >seq1891 Length=13189 Score = 194 bits (214), Expect = 3e-44 Identities = 182/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | ||||| || || |||||||| || |||||||| || || || Sbjct 7892 TCCTCCACGCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 7951 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || ||||||||||| ||||| || || | || |||||||| || || Sbjct 7952 AAGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGG 8011 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 |||||||||||||||||| ||||| || |||||| ||||| ||||| ||| | ||| | Sbjct 8012 AATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTC-GCTGGCTTCCA 8070 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 8071 CTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119 Score = 178 bits (196), Expect = 2e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| || || |||||||| || |||||||| || || || Sbjct 9221 CCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAA 9280 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| ||||| || || | || |||||||| || ||| Sbjct 9281 AGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 9340 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||||||||| ||||| || |||||| ||||| ||||| ||| | ||| || Sbjct 9341 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTC-GCTGGCTTCCAC 9399 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||||||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 9400 TTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCATAATG 9451 >seq14890 Length=108563 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||||| || || || |||||||| ||||||||||| |||||||| ||| Sbjct 69742 CCAGCAAAAATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCC 69683 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| ||||| | | || |||||||| ||||| || || ||||| | Sbjct 69682 TTCACATTCTCGATTGTGTCCGAAGCCTCGACTTCCAACGTGATCGTCTTGCCCGTCAAT 69623 Query 68442 GTCTTGACGAATATCTGCATT 68462 || ||||| || || |||||| Sbjct 69622 GTTTTGACAAAGATTTGCATT 69602 >seq10171 Length=5186 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| || || || || | || || || || || |||||||| |||||||| ||||||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | ||||||||| |||||||||||| | | || ||||| | || || || || || | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || |||||||| || || |||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496 >seq14918 Length=33047 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| || || || || | || || ||||| || ||||||||||| || ||||| || | Sbjct 544 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 485 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | ||||| || ||||||||||| | | || ||||| | || || ||||| || | Sbjct 484 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 425 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| ||||||||| Sbjct 424 TCAGTGTCTTAACGAAGATCTGCATT 399 >seq10153 Length=25059 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||| Sbjct 14460 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 14519 Query 84514 GCCCCACATCGGGC 84527 ||||| |||||||| Sbjct 14520 GCCCCGCATCGGGC 14533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 12016 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11957 Query 84516 CCCACATCGGGCAGG 84530 ||| |||||||| || Sbjct 11956 CCCGCATCGGGCTGG 11942 >seq12305 Length=25356 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 24684 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 24743 Query 84516 CCCACATCGGGCAGGT 84531 ||| |||||||| ||| Sbjct 24744 CCCGCATCGGGCTGGT 24759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 18367 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 18426 Query 84516 CCCACATCGGGCAGG 84530 ||| |||||||| || Sbjct 18427 CCCGCATCGGGCTGG 18441 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||| Sbjct 22089 AGAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCG 22030 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 22029 AGCCCCGCATCGGGC 22015 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 22886 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 22827 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 22826 CCCGCATCGGGC 22815 >seq11616 Length=16764 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 ||| ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||| Sbjct 12540 GAGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTC 12599 Query 84512 GAGCCCCACATCGGGC 84527 ||||||| |||||||| Sbjct 12600 GAGCCCCGCATCGGGC 12615 >seq8124 Length=14328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| || || || || | || || ||||| || ||||||||||| || ||||| || | Sbjct 9062 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 9003 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | ||||| || ||||||||||| | | || ||||| | || || ||||| || | Sbjct 9002 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 8943 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| |||| |||| Sbjct 8942 TCAGTGTCTTAACGAAGATCTACATT 8917 >seq9888 Length=56548 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 35868 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 35927 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 35928 CCCGCATCGGGC 35939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921449480597200