Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02]
15,010 sequences; 90,131,014 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1891 194 3e-44
seq14890 105 1e-17
seq10171 102 2e-16
seq14918 93.3 8e-14
seq10153 89.7 9e-13
seq12305 87.8 3e-12
seq11616 87.8 3e-12
seq8124 87.8 3e-12
seq9888 86.0 1e-11
>seq1891
Length=13189
Score = 194 bits (214), Expect = 3e-44
Identities = 182/229 (79%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|||||| || || || | ||||| || || |||||||| || |||||||| || || ||
Sbjct 7892 TCCTCCACGCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 7951
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | || || ||||||||||| ||||| || || | || |||||||| || ||
Sbjct 7952 AAGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGG 8011
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412
|||||||||||||||||| ||||| || |||||| ||||| ||||| ||| | ||| |
Sbjct 8012 AATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTC-GCTGGCTTCCA 8070
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||||| || || ||||| ||||| ||||| ||||||||
Sbjct 8071 CTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119
Score = 178 bits (196), Expect = 2e-39
Identities = 180/232 (78%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | |||| || || |||||||| || |||||||| || || ||
Sbjct 9221 CCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAA 9280
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || |||||||| ||||| || || | || |||||||| || |||
Sbjct 9281 AGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 9340
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||||||||||||||| ||||| || |||||| ||||| ||||| ||| | ||| ||
Sbjct 9341 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTC-GCTGGCTTCCAC 9399
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct 9400 TTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCATAATG 9451
>seq14890
Length=108563
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || ||||||| || || || |||||||| ||||||||||| |||||||| |||
Sbjct 69742 CCAGCAAAAATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCC 69683
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| ||||| | | || |||||||| ||||| || || ||||| |
Sbjct 69682 TTCACATTCTCGATTGTGTCCGAAGCCTCGACTTCCAACGTGATCGTCTTGCCCGTCAAT 69623
Query 68442 GTCTTGACGAATATCTGCATT 68462
|| ||||| || || ||||||
Sbjct 69622 GTTTTGACAAAGATTTGCATT 69602
>seq10171
Length=5186
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376
|||| || || || || | || || || || || |||||||| |||||||| |||||||
Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582
Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
| ||||||||| |||||||||||| | | || ||||| | || || || || || |
Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || |||||||| || || ||||||
Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496
>seq14918
Length=33047
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376
|||| || || || || | || || ||||| || ||||||||||| || ||||| || |
Sbjct 544 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 485
Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
| ||||| || ||||||||||| | | || ||||| | || || ||||| || |
Sbjct 484 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 425
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| ||||| |||||||||
Sbjct 424 TCAGTGTCTTAACGAAGATCTGCATT 399
>seq10153
Length=25059
Score = 89.7 bits (98), Expect = 9e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513
||||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||
Sbjct 14460 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 14519
Query 84514 GCCCCACATCGGGC 84527
||||| ||||||||
Sbjct 14520 GCCCCGCATCGGGC 14533
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 12016 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11957
Query 84516 CCCACATCGGGCAGG 84530
||| |||||||| ||
Sbjct 11956 CCCGCATCGGGCTGG 11942
>seq12305
Length=25356
Score = 87.8 bits (96), Expect = 3e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 24684 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 24743
Query 84516 CCCACATCGGGCAGGT 84531
||| |||||||| |||
Sbjct 24744 CCCGCATCGGGCTGGT 24759
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 18367 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 18426
Query 84516 CCCACATCGGGCAGG 84530
||| |||||||| ||
Sbjct 18427 CCCGCATCGGGCTGG 18441
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512
|| ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||
Sbjct 22089 AGAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCG 22030
Query 84513 AGCCCCACATCGGGC 84527
|||||| ||||||||
Sbjct 22029 AGCCCCGCATCGGGC 22015
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 22886 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 22827
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 22826 CCCGCATCGGGC 22815
>seq11616
Length=16764
Score = 87.8 bits (96), Expect = 3e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511
||| ||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||
Sbjct 12540 GAGTGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTC 12599
Query 84512 GAGCCCCACATCGGGC 84527
||||||| ||||||||
Sbjct 12600 GAGCCCCGCATCGGGC 12615
>seq8124
Length=14328
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376
|||| || || || || | || || ||||| || ||||||||||| || ||||| || |
Sbjct 9062 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 9003
Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
| ||||| || ||||||||||| | | || ||||| | || || ||||| || |
Sbjct 9002 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 8943
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| ||||| |||| ||||
Sbjct 8942 TCAGTGTCTTAACGAAGATCTACATT 8917
>seq9888
Length=56548
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 35868 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 35927
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 35928 CCCGCATCGGGC 35939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921449480597200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |