Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8124 100 7e-16 seq8372 96.9 8e-15 seq14918 93.3 1e-13 >seq8124 Length=14328 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| |||||| ||| ||||||||| || || |||||||| || Sbjct 8086 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 8027 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | || || ||| ||||| || ||||||||||| || ||| Sbjct 8026 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTC 7967 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||| ||||| || ||||| Sbjct 7966 AAAGTCTTCACGAAAATTTGCAT 7944 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| ||||| || || || ||||||||||| |||||||| Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| || | || || || ||||||||||| || || || || ||| Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| |||| |||| Sbjct 8940 AGTGTCTTAACGAAGATCTACATT 8917 >seq8372 Length=2112 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| |||||| ||| ||||||||| || || |||||||| || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | || || ||| ||||| || ||||||||||| || || Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTT 1295 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||| ||||| || ||||| Sbjct 1294 AAAGTCTTCACGAAAATTTGCAT 1272 >seq14918 Length=33047 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| ||||| || || || ||||||||||| |||||||| Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| || | || || || ||||||||||| || || || || ||| Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||||||| Sbjct 422 AGTGTCTTAACGAAGATCTGCATT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179427534026780