Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1891 131 2e-25 seq13295 89.7 6e-13 seq10171 87.8 2e-12 seq7326 87.8 2e-12 seq4219 86.0 7e-12 seq12874 84.2 2e-11 seq6255 84.2 2e-11 seq2543 84.2 2e-11 seq1304 84.2 2e-11 seq8124 82.4 8e-11 >seq1891 Length=13189 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| ||| | |||| |||||| || || ||||| || | Sbjct 9221 CCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAA 9280 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || | ||||||||| || || || | |||||| ||||| | || Sbjct 9281 AGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 9340 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||| ||| || ||||| | | | |||||||| | |||||| Sbjct 9341 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACT 9400 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || |||||||||||||||||||| Sbjct 9401 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq13295 Length=8782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 2432 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 2373 Query 57064 CTATACTACCGAGGATTGAATATATAACT 57092 |||||||||||||||| | || ||||| Sbjct 2372 CTATACTACCGAGGATACATTAAGTAACT 2344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 231 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 290 Query 57064 CTATACTACCGAGGAT 57079 |||||||||||||||| Sbjct 291 CTATACTACCGAGGAT 306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 2063 TTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 2122 Query 57064 CTATACTACCGAGGAT 57079 |||||||||||||||| Sbjct 2123 CTATACTACCGAGGAT 2138 >seq10171 Length=5186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 42064 GCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTT 42123 |||||||||| || || | ||||||||| || | || | || |||||||||| ||| | Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCC-TGAATC 583 Query 42124 TTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 || | |||| || | | ||||| || ||||| |||| ||| || || ||||| Sbjct 582 TTGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCA 523 Query 42183 GTTAGCGTCTTTACAAAGATTTGCATT 42209 || || ||||| ||||||||||||||| Sbjct 522 GTCAGTGTCTTGACAAAGATTTGCATT 496 >seq7326 Length=690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 422 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 481 Query 57064 CTATACTACCGAGGAT 57079 |||||||||||||||| Sbjct 482 CTATACTACCGAGGAT 497 >seq4219 Length=1760 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||||||||| | |||| |||| | |||||||||| |||||| | ||||||||||| Sbjct 1643 TTATGAAAAAAGCTAACTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCG 1702 Query 57051 GACATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||||||||||| Sbjct 1703 CGGATACTTACCACTATACTACCGAGGAT 1731 >seq12874 Length=58107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| |||||| | ||||||||||| |||| Sbjct 57115 AAAAACGTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 57174 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 57175 TTACCACTATACTACCGAGGA 57195 >seq6255 Length=36546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||| |||| |||| | ||||||||| |||||| | ||||||||||| |||| Sbjct 7609 AAAACTTTCCTCCCCGGCCGGGAATCGAACCTGGGTCTCGCACGTGACAGGCGCGGATAC 7550 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 7549 TTACCACTATACTACCGAGGA 7529 >seq2543 Length=2672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||||||||| | |||| |||| | |||||||||| |||||| | ||||||||||| Sbjct 1643 TTATGAAAAAAGCTAACTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCG 1702 Query 57051 GACATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 1703 CGGATACTTACCACTATACTACCGAGGA 1730 >seq1304 Length=17253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||| Sbjct 576 TTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCA 635 Query 57064 CTATACTACCGAGGAT 57079 |||||||||||||||| Sbjct 636 CTATACTACCGAGGAT 651 >seq8124 Length=14328 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||| ||||| || |||| ||||||||| | || | || |||||||||| ||| | || Sbjct 8655 TACCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTA 8597 Query 42127 GT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 | |||| || | | ||||| || ||||| |||| ||| || || ||||| || Sbjct 8596 GCCTTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTC 8537 Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209 | ||||| ||||||||||||||| Sbjct 8536 AATGTCTTGACAAAGATTTGCATT 8513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543110879698400