Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1891 100 3e-16 seq10171 96.9 3e-15 seq14918 87.8 2e-12 seq8124 86.0 6e-12 seq8372 82.4 7e-11 >seq1891 Length=13189 Score = 100 bits (110), Expect = 3e-16 Identities = 170/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 126869 ACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTT 126928 ||||||||| | || |||||| | | || | ||||||||| | || ||||| || Sbjct 7878 ACCATTTACAAGGCTCCTCCAC---GCAGACGAAGCACCAAATGGAGTGTGGACTCCTTC 7934 Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 || || ||||| || | || || || |||| ||| || || || | |||||| Sbjct 7935 TGGATGTTGTAGTCTGAAAGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAAT 7994 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 ||||| || || || || ||||| |||||||| ||| || |||| | ||||| Sbjct 7995 CGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATA 8054 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 ||||| | || ||||| | ||| | || |||||||| ||||| ||||| || ||| Sbjct 8055 GTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATC 8114 Query 127109 TGCATG 127114 |||||| Sbjct 8115 TGCATG 8120 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | || ||||| || || || ||||| || | || || || || Sbjct 9238 CACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGGCCGTCCTC 9297 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || || || | ||||||||||| || || || || ||||| |||||||| Sbjct 9298 CAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 9357 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || |||| | ||||| ||||| | || ||||| | ||| | || || Sbjct 9358 GATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTT 9417 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| |||||||| || ||||| Sbjct 9418 GCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq10171 Length=5186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| ||||||||||||||||||| || || ||||||||||||||| || || Sbjct 639 TTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCTTG 580 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | |||| |||||| | ||| ||||||| || | || ||||| ||| Sbjct 579 GCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTC 520 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || ||||| Sbjct 519 AGTGTCTTGACAAAGATTTGCAT 497 >seq14918 Length=33047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| |||||||||||||||| || || || ||||| || || || |||||| Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| |||||| | ||| ||||||| || | |||||||| ||| Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || || || |||||||| Sbjct 422 AGTGTCTTAACGAAGATCTGCAT 400 >seq8124 Length=14328 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| ||||||| ||||||||||| || || || |||||||||||| ||| || Sbjct 8086 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 8027 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGT 127089 |||| | |||| ||||||| || | |||||||| | || | ||| || || || Sbjct 8026 GCTTTGACATTCTCGATTGTGTCCG-ACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 7968 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || ||| || || ||||| ||||| Sbjct 7967 CAAAGTCTTCACGAAAATTTGCAT 7944 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| |||||||||||||||| || || || ||||| || || || |||||| Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| |||||| | ||| ||||||| || | |||||||| ||| Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || || || |||| ||| Sbjct 8940 AGTGTCTTAACGAAGATCTACAT 8918 >seq8372 Length=2112 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| ||||||| ||||||||||| || || || |||||||||||| ||| || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGT 127089 |||| | |||| ||||||| || | |||||||| | || | ||| || || || Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCG-ACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 1296 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 | ||| || || ||||| ||||| Sbjct 1295 TAAAGTCTTCACGAAAATTTGCAT 1272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475411584162400