Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14918 111 1e-19 seq8124 105 6e-18 seq1891 100 3e-16 seq10171 91.5 1e-13 >seq14918 Length=33047 Score = 111 bits (122), Expect = 1e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| |||||||||||||||||||||||||||||||| ||||| || | | Sbjct 530 ATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTAGCCTTCACATTT 471 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| || | ||| |||||||| |||| |||||||| || || || || || Sbjct 470 TCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTCAGTGTCTTAACG 411 Query 45330 AAAATTTGCAT 45340 || || ||||| Sbjct 410 AAGATCTGCAT 400 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | ||||| || |||||||||||||||||||| || || || |||| | || | Sbjct 135 CCTGCGAAAATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGAA-TCTTAGC 77 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 | | || | || | |||||| || | ||| |||||||| |||| || ||||| || | Sbjct 76 CTTAACGTTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAA 17 Query 45320 AGTTTTTACAAAAATT 45335 || || ||||| ||| Sbjct 16 TGTCTTGACAAAGATT 1 >seq8124 Length=14328 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| |||||||||||||||||||||||||||||||| ||||| || | | Sbjct 9048 ATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTAGCCTTCACATTT 8989 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| || | ||| |||||||| |||| |||||||| || || || || || Sbjct 8988 TCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTCAGTGTCTTAACG 8929 Query 45330 AAAATTTGCAT 45340 || || | ||| Sbjct 8928 AAGATCTACAT 8918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| || ||||||||||| |||||||| || || || ||||| || Sbjct 8653 CCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCC 8594 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | |||||| || | ||| |||||||| |||| || ||||| || | Sbjct 8593 TTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 8534 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||| Sbjct 8533 GTCTTGACAAAGATTTGCAT 8514 >seq1891 Length=13189 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | ||| ||||| || || || ||||| ||||| || || || Sbjct 9218 ATGCCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCC 9277 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || || || || | |||||||| || ||||| || Sbjct 9278 GAAAGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGG 9337 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || || ||||| ||| | |||||| | || Sbjct 9338 GGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCC 9397 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || |||||||| ||||| |||||||| |||||||| Sbjct 9398 ACTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | ||| | ||| || || || ||||| ||||| || || || | Sbjct 7892 TCCTCCACGCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTC--T 7949 Query 45173 GACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || | || || || || || || || | |||||||| || ||||| || Sbjct 7950 GAAAGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGG 8009 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || || ||||| ||| | |||||| | || Sbjct 8010 GGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCC 8069 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || |||||||| ||||| ||||| || || ||||| Sbjct 8070 ACTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119 >seq10171 Length=5186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| ||||| || ||||||||||| || || || ||||| || |||| || | Sbjct 627 ATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 569 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | |||||| || | ||| |||||||| |||| || ||||| || || || || || Sbjct 568 CTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAGTGTCTTGAC 509 Query 45329 AAAAATTTGCAT 45340 ||| |||||||| Sbjct 508 AAAGATTTGCAT 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451918392899600