Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10399 86.0 8e-12 seq3485 86.0 8e-12 >seq10399 Length=3951 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||| ||||| | || || || ||| ||||||||| |||||| || ||||| || Sbjct 3604 GTGAAAATGTAACGCGCGCTAGCCGAATCCTTGCCACCCTGGAGACGGGTTCCAAACTGC 3663 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 ||| ||| |||||||||||| |||||||| || | |||||| | |||| || || Sbjct 3664 CCAATTGGAAGAAGGAGATTGATGTTGTTTGATCCGACATAGTCCTGTGCCAGGTTTACT 3723 Query 176021 ATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGC 176079 || || ||| | | || ||| || || || || || ||| | || | ||| | Sbjct 3724 ATAGTCATCATC-AACGATTGTTCCCCATGGTGATAAGCAGACATTTCTCCTACAGCACC 3782 Query 176080 CGCCAACTGCGCCACCTTCATCTCATCCTTG 176110 || ||||| ||||| |||| ||| | |||| Sbjct 3783 AGCTAACTGAGCCACTTTCACCTCTTTCTTG 3813 >seq3485 Length=621 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGA 175960 ||||| ||||| | || || || ||| ||||||||| |||||| || ||||| || Sbjct 348 GTGAAAATGTAACGCGCGCTAGCCGAATCCTTGCCACCCTGGAGACGGGTTCCAAACTGC 289 Query 175961 CCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACA 176020 ||| ||| |||||||||||| |||||||| || | |||||| | |||| || || Sbjct 288 CCAATTGGAAGAAGGAGATTGATGTTGTTTGATCCGACATAGTCCTGTGCCAGGTTTACT 229 Query 176021 ATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGC 176079 || || ||| | | || ||| || || || || || ||| | || | ||| | Sbjct 228 ATAGTCATCATC-AACGATTGTTCCCCATGGTGATAAGCAGACATTTCTCCTACAGCACC 170 Query 176080 CGCCAACTGCGCCACCTTCATCTCATCCTTG 176110 || ||||| ||||| |||| ||| | |||| Sbjct 169 AGCTAACTGAGCCACTTTCACCTCTTTCTTG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613392090711600