Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1891 147 2e-30 seq10171 93.3 5e-14 seq8372 93.3 5e-14 seq8124 82.4 9e-11 >seq1891 Length=13189 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | ||||||||| | ||| |||||| ||||| |||||||| | Sbjct 9219 TGCCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCG 9278 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || |||| || | |||||| ||||| || ||||| ||||| ||||| | | Sbjct 9279 AAAGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGG 9338 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| |||| | | | |||||||| | ||||| Sbjct 9339 GAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCA 9398 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 9399 CTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq10171 Length=5186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| ||||||||||||||||| | ||| | | |||||||||| |||||| | Sbjct 351 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 292 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 |||| || | | || || | ||||| |||| |||||||| ||||| || ||| Sbjct 291 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 232 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || ||||| ||||||||| Sbjct 231 GTCTTCACAAATATTTGCATT 211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 46449 GCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCT 46508 |||| || || || ||||| |||||||| || | ||| | || |||||||||| |||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 46509 TCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCG 46568 | ||||| || | | ||||| || ||||| || | ||| || || ||||| | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 46569 TCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || ||||||||||||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496 >seq8372 Length=2112 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| ||||||||||||||||| | ||| | | |||||||||| |||||| | Sbjct 1989 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 1930 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 |||| || | | || || | ||||| |||| |||||||| ||||| || ||| Sbjct 1929 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 1870 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || ||||| ||||||||| Sbjct 1869 GTCTTCACAAATATTTGCATT 1849 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| ||||||||||||||||| | ||| | | |||||||||| |||||| | Sbjct 1700 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 1641 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 |||| || | | || || | ||||| |||| |||||||| ||||| || ||| Sbjct 1640 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 1581 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || ||||| |||||||| Sbjct 1580 GTCTTCACAAATATTTGCAT 1561 >seq8124 Length=14328 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| ||||||||||||||||| | ||| | | |||||||||| |||||| | Sbjct 8367 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 8308 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 |||| || | | || || | || || |||| || ||||| ||||| || ||| Sbjct 8307 TTGACGTTCTCGATAGTATCAGATGCCTCTACCTCCAGGGTAATGGTCTTGCCAGTGAGC 8248 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||||||||| Sbjct 8247 GTCTTCACGAAGATTTGCAT 8228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565132347145200