Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1891 140 3e-28 seq14012 102 8e-17 seq4940 102 8e-17 >seq1891 Length=13189 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || ||||| ||||| ||||||||| | || || || |||| | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| || |||| ||||| || || |||||| | ||||| Sbjct 9387 GACACTATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 9329 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || || ||| |||| |||| || || || |||||||| Sbjct 9328 ACAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTACAA 9269 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| ||||||| ||| || | || ||| Sbjct 9268 CATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGGC 9220 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || ||||| ||||| ||||||||| | || || || |||| | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| || |||| ||||| || || |||||| | ||||| Sbjct 8059 GACACTATCGAAAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 8001 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || || ||| | || |||| || || || |||||||| Sbjct 8000 ACAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAA 7941 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||||||||||| ||| || | || || Sbjct 7940 CATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGG 7893 >seq14012 Length=40231 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| ||| || |||||||| || || || ||||| ||||| || || | |||| Sbjct 1929 ACCAAATTCTCATTGACGATACCATCAGAAGCAGCGAAGAAGGCGAGAACACGAGTGATA 1988 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 ||| ||||| |||| ||| | | ||| || ||||| |||| || |||||| Sbjct 1989 AAAAAACGCTCACTGTCAGTCATGTTGTTCCAATCCTTGGTGTCTTTGGCAAGATCCACC 2048 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 |||||||| ||||| || || | || || ||||| | ||| |||||| | || Sbjct 2049 TCCTCGACCACCCAAATAGATGCTACAGCCTTCTTGTAAAATGCCCAAATGTCCCAGTAC 2108 Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCGCTTG 133514 || || |||||||||||||| || || |||||||| | |||||||| |||| Sbjct 2109 TGGATCGGAAAAATCACAAAGCGATTTGGATTTTCGCGTAGAAGCGGCTCGTCTTG 2164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||||| | ||||| | | || ||||| || ||||| | ||| || ||||||||||| Sbjct 1768 ACGTATGCCTCGATCAACTTAGAGTACATCTCGGAGTGGATGTTTTCGATGGCGATTTGG 1827 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||||| |||||||| | ||||| || ||||| ||||||||||||||||| Sbjct 1828 AAGCCATAAAAGCATCTAGCCTCCGGGACTTGCACCTCTTGAGCGAAACGCTC 1880 >seq4940 Length=754 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| ||| || |||||||| || || || ||||| ||||| || || | |||| Sbjct 425 ACCAAATTCTCATTGACGATACCATCAGAAGCAGCGAAGAAGGCGAGAACACGAGTGATA 484 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 ||| ||||| |||| ||| | | ||| || ||||| |||| || |||||| Sbjct 485 AAAAAACGCTCACTGTCAGTCATGTTGTTCCAATCCTTGGTGTCTTTGGCAAGATCCACC 544 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 |||||||| ||||| || || | || || ||||| | ||| |||||| | || Sbjct 545 TCCTCGACCACCCAAATAGATGCTACAGCCTTCTTGTAAAATGCCCAAATGTCCCAGTAC 604 Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCGCTTG 133514 || || |||||||||||||| || || |||||||| | |||||||| |||| Sbjct 605 TGGATCGGAAAAATCACAAAGCGATTTGGATTTTCGCGTAGAAGCGGCTCGTCTTG 660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||||| | ||||| | | || ||||| || ||||| | ||| || ||||||||||| Sbjct 264 ACGTATGCCTCGATCAACTTAGAGTACATCTCGGAGTGGATGTTTTCGATGGCGATTTGG 323 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| |||||||| | ||||| || ||||| ||||||||||||||||||||| Sbjct 324 AAGCCATAAAAGCATCTAGCCTCCGGGACTTGCACCTCTTGAGCGAAACGCTCGACC 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078955078400