Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq13898 201 9e-46 seq14124 107 1e-17 seq388 91.5 1e-12 seq1685 89.7 4e-12 seq12489 86.0 5e-11 seq9194 86.0 5e-11 >seq13898 Length=105884 Score = 201 bits (222), Expect = 9e-46 Identities = 970/1515 (64%), Gaps = 53/1515 (3%) Strand=Plus/Minus Query 517226 ATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCA 517285 || || ||||||||| || || || || | |||| ||||| ||||| || |||||| Sbjct 94682 ATCTTGTTGGATTTGCCAGTAGACTTGTCCACAGCAGACACATGCAGAATGCCGTTGGCA 94623 Query 517286 TCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCC 517345 |||| |||||| ||||||||||| ||||| || ||||| | || || || || || | Sbjct 94622 TCCAGATCAAAGGTGACTTCAATCTGAGGCACTCCTCTAGGGGCTGGGGGAATGCCAGTC 94563 Query 517346 AAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATT 517405 || | || || || ||| || || ||||| || | ||||||||| || || | | Sbjct 94562 AAGTCGAAAGTGCCAAGACGGTTGTTGTCTTTGGTCATGGCTCGTTCACCTTCAAACACT 94503 Query 517406 TGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA 517465 ||||| | ||| | | ||| || || ||||| || || ||| | ||| ||| | Sbjct 94502 TGGATGCTGACTGCTGGTTGGTTGTCGGAATAGGTGGTGAATGTTTGGGAAGCTTTGGCA 94443 Query 517466 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCA 517525 || || | ||| | || || || |||||||| | || || ||||| || | || Sbjct 94442 GGGATGGAGTGGTTGCGTTCGATGATCTTGGTCATTACTCCTCCAGCTGTCTCAATGCCC 94383 Query 517526 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 517585 ||||| |||||||| ||||| || | | | || || | | | || | || Sbjct 94382 AGAGACAGAGGAGTCACATCCACCAACAACACATCTTTGACTGTGCTGTCCTGTACTCCT 94323 Query 517586 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTA----AC 517641 ||||| |||||||| | || || ||||| || || |||||||| |||||| || Sbjct 94322 GAGAGAATGGCTGCTTGCACTGCTGCTCCATAGGCCACTGCTTCATCTGGATTAATGGAC 94263 Query 517642 AGTTTCATTTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCT-TACCTTAGG 517698 | |||| || | |||||| | ||| || | ||| || |||| ||| || || || Sbjct 94262 AAGTTCA---AG-TCTTTACCGTGGAAGAACTCCTTG--AGCAGTT-TCTGCACTTTGGG 94210 Query 517699 AATACGAGATGATCCTCCAACTAATACAATTTCATGCA-CCTGTGATTTATCCAGTTTTG 517757 ||| |||| || || || || | || || || | | ||| | || |||||||| | Sbjct 94209 AATGCGAGTAGAGCCACCCACCATCACTATCTCGTCAATACTGCG-CTTGTCCAGTTTAG 94151 Query 517758 AATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTT 517817 ||| || | | || || ||| | | | | | || | || | ||| | | Sbjct 94150 CATCTCTCAATGCATGCTCCACAGGTCCCAAAGTCTGGCGGAATAGGTGGGCACACAACT 94091 Query 517818 CTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAA 517877 | || || | ||||| | | |||| | | || || || || ||| ||| |||| Sbjct 94090 CCTCAAACCTGGCTCTGCTCAAAGTGGTGTGGAAGTCTATGCCATCACACAGAGAGTCAA 94031 Query 517878 CTTCAATCGTAGTTTGAGTCGAA--GAAGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 ||||| |||| |||||| ||| | | | |||| ||||| || |||||||| || Sbjct 94030 TCTCAATGGTAGCTTGAGTGGAACTGGACAAAGTG--CGTTTGGCTGCCTCACATGCAGT 93973 Query 517936 CCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTG 517993 || || | || |||||| | | ||||| | | | || || ||| |||||| Sbjct 93972 TCTCAGACGTCTCAAGGCTCTGG--GATTGTTGCTGATGTCACGGCCATGTTTCCTCTTG 93915 Query 517994 AAATCTTCAACACACCATGTTACAAGA---CGATTATCAAAATCTTCACCTCCCAATTTA 518050 || ||| | | ||| ||||| | || ||||| ||||| ||||||| | Sbjct 93914 AACTCTGCTTTTAA--ATG-GGCAAGAATGAGGTTGTCAAAGTCTTCTCCTCCCAGATGG 93858 Query 518051 GTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTT 518107 || | ||| | || | | | |||| || || ||| || ||| || || | Sbjct 93857 GTGTCTCCAGCAGTTGATTTGACTTCAAATAGAGATCCTTCAGCAATGCTCAGAATGGAC 93798 Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC-TTTGTCTTGGTT 518166 |||||| || || || |||| ||||| || || |||||| | || ||| | || Sbjct 93797 ACATCAAAAGTGCCTCCTCCCAAGTCAAAGATGAGCACATTCTTGTCACCAGTC-AGCTT 93739 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 || || |||||||| || | || || || || || || || || || | | |||||| Sbjct 93738 CTTGTCCAGACCATAAGCCAGTGCTGCTGCTGTCGGCTCGTTGATGATGCGGAGAACATT 93679 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||||||||||| || ||||| ||||||||||| | ||| || ||||| || || || Sbjct 93678 GAGACCAGCAATAGCACCAGCATCCTTAGTGGCTTGACGTTGAGAGTCGTTGAAGTAGGC 93619 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||| ||||| | || || || | ||| | ||| | || || || || | || Sbjct 93618 AGGCACAGTGACCACAGCTTCTTTGACTGGATGACCGAGGTAGGCCTCAGCTGTCTCCTT 93559 Query 518347 CATTTTACTTAAAATCAT--TGATGAAATTTGTTCTGG--GGAATA--TTGCTTGGATTC 518400 ||| || | | | ||| || || || | ||||| ||| | || || | | Sbjct 93558 CATCTTGGTGAGCACCATGCTGCTG--ATCTCCTCTGGCTTGAACACCTTCTTTTGGCCC 93501 Query 518401 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 518460 || | || || | | | |||||| || || || ||||| || ||||| Sbjct 93500 AT----AAATTCCACCTGGACAGCTGGTTTGCCGCCCTGGTTGATCACTTTGAAAGGCCA 93445 Query 518461 GTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGC 518520 | ||| || || ||| ||||| | ||| | ||| || |||||| | |||||| || Sbjct 93444 ATGTTTGATGTCCTTTTGCACACTCTCGTCCTCAAAGCGTCGACCAATCAGTCGTTTGGC 93385 Query 518521 ATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 518580 || ||||| || || || || || | || | |||||| ||||||||||||| Sbjct 93384 GTCGAAAATGGTGTTCTCAGGGTTGCGAGCCACCTGGTCTTTGGCGCCATCTCCAATCAG 93325 Query 518581 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC---GATTACCTTGATCATT 518637 | ||| || || || | ||||| || | ||||| || || ||| || Sbjct 93324 TCGCTCTTGGTCAGTGAACGCCACATA-ACTG--GGTGTGCATTTGTTGCCCTGACTGTT 93268 Query 518638 CGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAA 518697 ||||| || || ||||| || || || | || || |||||| | | || || || | Sbjct 93267 GGCAATGATCTCGACTTTGCCGTTCTGGTAGACCCCAACACAAGAATAGGTAGTGCCAAG 93208 Query 518698 ATCAATACCAATAGC 518712 ||||| |||||||| Sbjct 93207 GTCAATTCCAATAGC 93193 >seq14124 Length=51435 Score = 107 bits (118), Expect = 1e-17 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 ||| | |||||| |||| || |||||||| || || ||||| |||| | |||||| | Sbjct 30258 ATCCAAACCATAAGCAATGGCGGCAGCAGTCGGCTCGTTAATTATTCGAACAACATTTAA 30199 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 |||||| || ||||||| || || || || |||| || | ||| || ||||| ||||| Sbjct 30198 ACCAGCGATCGTTCCTGCGTCCTTGGTTGCCTGTCGCTGAGCATCATTGAAATAAGCAGG 30139 Query 518290 AACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 |||||| | |||||||| | ||||| | || | |||||| Sbjct 30138 AACAGTCACAACGGCATTCTTAACTTCGTGTCCCAAATAAGC 30097 >seq388 Length=6371 Score = 91.5 bits (100), Expect = 1e-12 Identities = 286/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 517305 CAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGAT 517364 ||||||| || || ||||| ||||||| ||||| || | | ||| | || || Sbjct 4997 CAATTTGTGGAACGCCTCTGGGAGCAGGAGGGATGCCACTAAGCTCGAATTTGCCGAGCA 4938 Query 517365 TATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTT 517424 ||| || || || || | ||||| || ||| | | |||||| || ||| | Sbjct 4937 AATTGTTGTCCTTGGTCATGGCACGTTCGCCTTCGTAGACTTGGATGAGCACACCAGGCT 4878 Query 517425 GATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 | || || || || || || || | |||| || | || ||| || || ||||| | Sbjct 4877 GGTTGTCGGAGTATGTGGTGAA-AGTCTGAGAAGTCTTGGTAGGGATGGTGGTGTTGCGT 4819 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 | ||| | |||||| | ||| || || || || | ||| || ||||| || | ||| Sbjct 4818 TTAATCAACGAGGTCATCACACCTCCAGCAGTCTCAATACCCAGCGAAAGTGGGGCGACG 4759 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGAC-CAACA-AGAATAGCTGCTT 517601 || | || | | | ||||| || || | ||| | | ||| ||||| || |||| Sbjct 4758 TCGAGCAGAAGCAGGTCTTGAACATTCTC--CGACTTGTCTCCACACAGAATGGCGGCTT 4701 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 | | ||||||||||||||| || || ||||| ||||| | | | || || | ||| | Sbjct 4700 GCACAGCAGCACCATATGCGACGGCCTCATCCGGATTGATGGACTTGTTAAGCTCTTTGC 4641 Query 517662 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 517720 | ||| || | ||| || || | ||| ||||| |||||||| | || || ||||| Sbjct 4640 CGGAGAAGAAGTCTGAGAGCAGCT-TCTGCACCTTGGGAATACGGGTGGAGCCACCAACC 4582 Query 517721 AATACAATTTCATG 517734 | ||||| ||||| Sbjct 4581 AGGACAATGTCATG 4568 >seq1685 Length=49379 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 399329 TTTTGCTATTTTTATTGAACCGTGGCATGGAGACATATTCTTTTTTCTAGATCTCAAGAA 399388 ||||||||| | | || || ||||||| ||| || | |||||| || ||||| || Sbjct 5623 TTTTGCTATCTACTTGGAGCCATGGCATGCAGATATTATGGATTTTCTTGAGCTCAAAAA 5682 Query 399389 AAATACTGGAGCAGAAACAGAAAGAGCCAGAGATTTATTTTTGGGTTTGATGATTAATGA 399448 |||| ||| ||||| ||| |||| ||||||||||||| || ||| |||| || Sbjct 5683 GAATATTGGGTCAGAAGAAGACCGAGCTAGAGATTTATTTTATGGATTGTGGATTCCCGA 5742 Query 399449 CATTTTCATGGAAAGAGTTTATAAAGACGATGTTTGGTCATTAATGTGTCCGTCTCAATG 399508 |||| ||| ||||||| | | || | | |||||||| |||||||| | | || Sbjct 5743 TCTTTTTATGAAAAGAGTAGAGACTGATCAAATGTGGTCATTGATGTGTCCTCATGATTG 5802 Query 399509 TCCT 399512 |||| Sbjct 5803 TCCT 5806 >seq12489 Length=2929 Score = 86.0 bits (94), Expect = 5e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 |||||||| ||||||| ||||| ||||| || ||||||||||| || || | | | | | Sbjct 2390 AGAATAGCGGCTTGAACGGCAGCGCCATAGGCGACAGCTTCATCCGGGTTGATACTCTTA 2331 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGA 517707 ||||||| || || ||| || | || || | || ||| ||||| || ||||||| Sbjct 2330 TTTAGTTCCTTGCCTGAGAAGAAGTCCGAGAGCAATT-TCTGAACCTTCGGGATACGAGT 2272 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 517751 || || || || | || ||||| || | |||||| || |||| Sbjct 2271 GGAACCACCGACAAGGACGATTTCGTGAATCTGTGACTTGTCCA 2228 >seq9194 Length=1537 Score = 86.0 bits (94), Expect = 5e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 |||||||| ||||||| ||||| ||||| || ||||||||||| || || | | | | | Sbjct 468 AGAATAGCGGCTTGAACGGCAGCGCCATAGGCGACAGCTTCATCTGGGTTGATACTCTTA 409 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGA 517707 || |||| ||| ||| || || | || || | || ||| ||||| || ||||||| Sbjct 408 TTCAGTTCTTTGCCAGAAAAGAAGTCCGAGAGCAATT-TCTGAACCTTCGGGATACGAGT 350 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 517751 || || || || | || ||||| || | |||||| || |||| Sbjct 349 GGAACCACCGACGAGAACGATTTCGTGAATCTGTGACTTGTCCA 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780077554357060