Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13898 165 1e-35 seq9194 111 2e-19 seq7895 95.1 2e-14 seq8173 87.8 2e-12 seq388 82.4 1e-10 >seq13898 Length=105884 Score = 165 bits (182), Expect = 1e-35 Identities = 765/1201 (64%), Gaps = 31/1201 (3%) Strand=Plus/Minus Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTA 6670 ||||| ||| ||| |||| ||| || | ||||| | || ||||| | |||||| Sbjct 94727 TCAATCTCTGCTTGGGATAGTCTACCTCTTTCATTTTTGATTTGGATCTTGTTGGATTTG 94668 Query 6671 CCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTT 6730 || | | ||| || ||||| |||| || ||| || || ||||| | ||| || | Sbjct 94667 CCAGTAGACTTGTCCACAGCAGACACATGCAGAATGCCGTTGGCATCCAGATCAAAGGTG 94608 Query 6731 ACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCA 6790 || | ||| || || || || || || | ||||| || || || || || || ||| Sbjct 94607 ACTTCAATCTGAGGCACTCCTCTAGGGGCTGGGGGAATGCCAGTCAAGTCGAAAGTGCCA 94548 Query 6791 AGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCA 6850 || |||| || | | | | |||||||||||| | |||| || | || || Sbjct 94547 AGACGGTTGTTGTCTTTGGTCATGGCTCGTTCACCTTCAAACACTTGGATGCTGACTGCT 94488 Query 6851 GGTTGATTATCTTGTGCCGTTGAGAAGATTTGTT---CTTTCTTAG--ATGGAATCGTCG 6905 ||||| || || || | ||| |||| |||| || ||||| | || | Sbjct 94487 GGTTGGTTGTCGGAATAGGTGGTGAATGTTTGGGAAGCTTTGGCAGGGATGGAGTGGTTG 94428 Query 6906 TATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAG 6965 || || || | | |||||| | || || || || | || |||||||||| Sbjct 94427 CGTT---CG--ATGATCTTGGTCATTACTCCTCCAGCTGTCTCAATGCCCAGAGACAGAG 94373 Query 6966 GTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGG 7025 | ||||| |||| | |||| |||| || | || | | | || | | |||| Sbjct 94372 GAGTCACATCCACCAACAACACATCTTTGACTGTGCTGTCCTGTACTCCTGAGAGAATGG 94313 Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 | ||||| || | || || || || || || ||||| || ||||| | |||| | Sbjct 94312 CTGCTTGCACTGCTGCTCCATAGGCCACTGCTTCATCTGGATTAATGGACAAGTTCAAGT 94253 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 ||||||||| || | ||| | || || || | ||| || || || || || |||| Sbjct 94252 CTTTACCGTGGAAGAACTCCTTGAGCAGTTTCTGCACTTTGGGAATGCGAGTAGAGCCAC 94193 Query 7146 CGACCAAAACGATTTCATTCACT--TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTT 7203 | |||| || || || | || | | || || || | || | |||| | || | Sbjct 94192 CCACCATCACTATCTCGT-CAATACTGCGCTTG-TCCAGTTTAGCATCTCTCAATGCATG 94135 Query 7204 TTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACG 7263 || |||||| ||| | | ||||| | || ||||| |||||||| | || | Sbjct 94134 CTCCACAGGTCCCAAAGTCTGGCGGAATAGGTGGGCACACAACTCCTCAAACCTGGCTCT 94075 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 | | | | || | ||| || | ||| || | | || ||||| |||||||| | ||| Sbjct 94074 GCTCAAAGTGGTGTGGAAGTCTATGCCATCACACAGAGAGTCAATCTCAATGGTAGCTTG 94015 Query 7324 TGCCGTCGAA---GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 | | ||| || || || || || || |||||| || |||| | ||| | | Sbjct 94014 AG---TGGAACTGGACAAAGTGCGTTTGGCTGCCTCACATGCAGTTCTCAGACGTCTCAA 93958 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||| | || || | || || |||||| | || |||||| | || || Sbjct 93957 GGCTCTGGGATTGTTGCTGATGTCACGGCCATGTTTCCTCTTGAACTCTGCTTTTAAATG 93898 Query 7441 TCGAAG---GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 ||| ||| | || || ||||| || |||| || || || || || || | Sbjct 93897 GGCAAGAATGAGGTTG---TCAAAGTCTTCTCCTCCCAGATGGGTGTCTCCAGCAGTTGA 93841 Query 7498 TTTGACTTCAAAGATACCTCCTT---CAATGTTTAACAACGAAACATCAAACGTACCACC 7554 |||||||||||| | | ||||| ||||| | | | || |||||||| || || || Sbjct 93840 TTTGACTTCAAATAGAGATCCTTCAGCAATGCTCAGAATGGACACATCAAAAGTGCCTCC 93781 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTC-GTCTTTGTTCTTATCGAGACCGTACG 7613 |||| |||||| ||||| || ||| | || | ||| ||||| || ||||| || | Sbjct 93780 TCCCAAGTCAAAGATGAGCACATTCTTGTCACCAGTC-AGCTTCTTGTCCAGACCATAAG 93722 Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673 | | || || || || || || || || || || ||| || || |||||||||| Sbjct 93721 CCAGTGCTGCTGCTGTCGGCTCGTTGATGATGCGGAGAACATTGAGACCAGCAATAGCAC 93662 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733 | ||||| || || ||||| ||||| || ||||| |||||||| || || || || || | Sbjct 93661 CAGCATCCTTAGTGGCTTGACGTTGAGAGTCGTTGAAGTAGGCAGGCACAGTGACCACAG 93602 Query 7734 CGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCA 7793 | || ||||| | |||||| || | || || | || ||||| ||||| || |||| Sbjct 93601 CTTCTTTGACTGGATGACCGAGGTAGGCCTCAGCTGTCTCCTTCATCTTGGTGAGCACCA 93542 Query 7794 T 7794 | Sbjct 93541 T 93541 >seq9194 Length=1537 Score = 111 bits (122), Expect = 2e-19 Identities = 191/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | |||||||| ||||| | | || | ||| ||||| | ||| || ||| Sbjct 599 TCTTTGTCGGAATCGTAGTATTGCGCTTGATCAACGGCGTCATCTCAAAACCTTTAATTT 540 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 ||| ||| || |||| ||| | || ||||| | | ||||| | |||| | || Sbjct 539 CGACTCCCAGTGACAAAGGGGCAACATCCAACAACAGAAGGTCCTCCACAGCT-CGAGAT 481 Query 7008 CT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 | ||||| | | || |||||||| || | || || || ||||| || ||||| ||| Sbjct 480 TTATCACCTGAGAGAATAGCGGCTTGAACGGCAGCGCCATAGGCGACAGCTTCATCTGGG 421 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 || || | |||||||||||||| || ||| | ||||| | || || |||| ||| Sbjct 420 TTGATACTCTTATTCAGTTCTTTGCCAGAAAAGAAGTCCGAGAGCAATTTCTGAACCTTC 361 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||||| || || || |||||||| | ||||||||| Sbjct 360 GGGATACGAGTGGAACCACCGACGAGAACGATTTC 326 >seq7895 Length=6681 Score = 95.1 bits (104), Expect = 2e-14 Identities = 375/579 (65%), Gaps = 17/579 (3%) Strand=Plus/Plus Query 6959 GACAGAGGTGTCACGTCCA--AGAGTAACAGGTCTTGAACAGATTCGTTCCCTT-CACCC 7015 |||| ||||||||| || | ||| |||| |||| |||| | | || ||| | || Sbjct 3994 GACAAAGGTGTCACATCTACCAGAAGAACA--TCTTTTACAG-TGCTGTCGCTTACTCCA 4050 Query 7016 GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT 7075 | ||||| || ||||| || | || || || || || || || || || || || | Sbjct 4051 GACAAGATAGCAGCTTGCACAGCAGCACCATAAGCCACTGCTTCGTCCGGATTGATGGAC 4110 Query 7076 TTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGT 7135 |||||||||||| || | || | || | || || |||||||| ||||||| Sbjct 4111 AAATTCAGTTCTTTTCCATGGAAGAACTCTTTAAGCAGTTTCTGAATTTTGGGGATTCTG 4170 Query 7136 GTCGATCCACCGACCAAAACGATTTCATTCACT--TTCGATTTATCGATCTTTGAGTCTC 7193 || || || ||||||| ||| || || ||| | ||| ||||| | ||||| |||| Sbjct 4171 GTGGAGCCGCCGACCATAACTATCTC-GTCAATGCTTC-TCTTATCCAACTTTGCATCTC 4228 Query 7194 GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAA 7253 | | || || |||||| ||| || ||||||| || ||||| || |||| Sbjct 4229 TCAAGGCTTGGTCCACAGGTCCCAGGGTCTTTCGGAACAGATCTGCACACAACTCTTCAA 4288 Query 7254 AACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAA 7313 | | || || | | | || | || || | || || ||| ||||| ||||||| Sbjct 4289 ACCTGGCTCGACTGAGTGTGGTGTGAAAGTCGATTCCATCAAATAGAGAATCTATTTCAA 4348 Query 7314 TGGTTG--TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 |||| | | ||| || | ||| | ||||| || || |||||| || |||| || Sbjct 4349 TGGTAGCCTGAGTGGAGTTGGAGAGA--GTTCGTTTAGCAGCCTCACAAGCAGTTCTCAA 4406 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 |||||||| || | ||| || | || || ||||| || | ||||| | Sbjct 4407 GCGACGAAGAGCTCTCGGATTCTTGCTGATGTCACGGCCGTGTTTGCGCTGGAACTCGGC 4466 Query 7432 AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 || ||| | || | || || ||||||||||||| || ||||| || || Sbjct 4467 TTTGAGGTGACCTAGCACCAGGTTGTCAAAGTCTTCACCACCCAGATGCGTATCTCCAGC 4526 Query 7492 GGTCGCTTTGACTTCAAAGA---TACCTCCTTCAATGTT 7527 ||| | ||||||||| |||| |||| | ||||||| Sbjct 4527 GGTGGATTTGACTTCGAAGAGTGAACCTTCGGCAATGTT 4565 >seq8173 Length=2379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | |||||||| ||||| | | || | || ||||| | ||| || ||| | Sbjct 618 TCTTGGTCGGAATCGTAGTATTGCGCTTGATCAACGACGTCATCACACCTCCAGCAGTCT 559 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC-GTTC 7006 | | ||| || |||| ||| | || ||||| | | ||||| | |||| | | | | Sbjct 558 CAATTCCCAGTGACAAAGGGGCAACATCCAACAACAGAAGGTCCTCCACAGCTCCAGATT 499 Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 || ||| | | || | |||||| || | || || |||||||| || ||||| | | Sbjct 498 TATT-ACCTGAGAGAATAGTGGCTTGAACTGCAGCGCCATATGCGACAGCTTCATCCGCG 440 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 || | | ||||| ||||| || || || | ||||| | || | |||| ||| Sbjct 439 TTGGTACTCTTATTGAGTTCCTTGCCCGAGAAGAAGTCCGAGAGCAACTTCTGAACCTTC 380 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTAT 7178 ||||| || || || |||||||| | ||||||||||| | || ||| |||| Sbjct 379 GGGATACGAGTAGAACCACCGACAAGAACGATTTCATGAATTTCCGACTTAT 328 >seq388 Length=6371 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 7471 ACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAA 7530 ||||||||| || || || || || | ||||| |||||||| || |||| ||| | | Sbjct 3537 ACCCAAGTGAGTGTCTCCGGCAGTGGACTTGACCTCAAAGATGCCGTCTTCGATGGTCAG 3478 Query 7531 CAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CG-TATC--GT 7586 | || ||||| || ||||||||||||| || || ||||| || || || | || || Sbjct 3477 AATGGAGACATCGAAAGTACCACCACCCAAATCGAAGATGAGCACATTGCGTTCTCCAGT 3418 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | |||| || || |||||||| ||||| || || || ||||| || Sbjct 3417 CCCCTTT----TTGTCCAGACCGTAGGCGATGGCAGCAGCTGTTGGCTC 3373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635013633208400