Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1891 138 3e-27 seq8124 118 2e-21 seq10171 111 3e-19 seq14918 102 2e-16 >seq1891 Length=13189 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| || | |||||||| || || || Sbjct 9239 ACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGGCCGTCCTCC 9298 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| || || || | ||| ||||||||||| ||||||||||| |||||||| Sbjct 9299 AACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 9358 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| || || ||||| ||||||||| | ||| | ||||| Sbjct 9359 ATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTG 9418 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | |||||| Sbjct 9419 CCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| || | |||||||| || || || | |||| Sbjct 7917 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGGCCGTCCTCTAACTGC 7976 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | ||| ||||||||||| ||||||||||| |||||||| || || Sbjct 7977 TTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 8036 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || || ||||| ||||||||| | ||| | ||||| || || Sbjct 8037 GCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTG 8096 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| |||||||| | ||||| Sbjct 8097 AGAGTCTTTACGAAGATCTGCAT 8119 >seq8124 Length=14328 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||| || |||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 8655 TACCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAG 8596 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| |||||||||||||| || |||||||| || |||| ||||| || |||| Sbjct 8595 CCTTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCA 8536 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 8535 ATGTCTTGACAAAGATTTGCATT 8513 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || ||||| | ||| || ||||| || |||||||||||||| ||||| |||| Sbjct 9062 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 9003 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || || |||||||| || |||||||| || |||| || || || | Sbjct 9002 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 8943 Query 195116 TCAAAGTTTTTACGAA 195131 ||| || || ||||| Sbjct 8942 TCAGTGTCTTAACGAA 8927 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||||||||| || | || || |||||||| ||||| || || ||||| || || || Sbjct 8368 ACCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGC 8309 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||||||||| || || || || || || || ||||||| ||||| || || | Sbjct 8308 CTTGACGTTCTCGATAGTATCAGATGCCTCTACCTCCAGGGTAATGGTCTTGCCAGTGAG 8249 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || ||||| | |||||| Sbjct 8248 CGTCTTCACGAAGATTTGCAT 8228 >seq10171 Length=5186 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || ||||| | ||| || || ||||| |||||||| || ||||| ||||| | Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||||||||| |||||||| || |||||||| || |||| ||||| || | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | ||||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496 >seq14918 Length=33047 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || ||||| | ||| || ||||| || |||||||||||||| ||||| |||| Sbjct 544 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 485 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || || |||||||| || |||||||| || |||| || || || | Sbjct 484 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 425 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 424 TCAGTGTCTTAACGAAGATCTGCATT 399 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||||||||| || | || || ||||| || |||||||| || ||||| ||||| || Sbjct 137 TACCTGCGAAAATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGAATCTTAG 78 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| ||||||||||||||||| || |||||||| || |||| ||||| || |||| Sbjct 77 CCTTAACGTTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCA 18 Query 195119 AAGTTTTTACGAA 195131 | || || || || Sbjct 17 ATGTCTTGACAAA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109268229352670