Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7895 129 5e-24 seq13898 105 5e-17 seq12671 93.3 3e-13 >seq7895 Length=6681 Score = 129 bits (142), Expect = 5e-24 Identities = 323/484 (67%), Gaps = 14/484 (3%) Strand=Plus/Minus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCT-TTCATCTGGTA 551952 |||||||||||| | ||||||||||| || || |||||| |||| | || || | Sbjct 4419 AGCTCTTCGTCGCTTGAGAACTGCTTGTGAGGCTGCTAAACGAACTCTCTCCAACT-CCA 4361 Query 551953 CTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATAC--GCCTAT 552010 |||| | || |||||| ||||||| ||||||| ||||| || | | | || || Sbjct 4360 CTCAGGCTACCATTGAAATAGATTCTCTATTTGATGGAATCGACTTTCACACCACACTCA 4301 Query 552011 TTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGT 552070 |||| |||| |||||||| | ||| | ||||| || |||| || | | ||| || Sbjct 4300 GTCGA--GCCAGGTTTGAAGAGTTGTGTGCAGATCTGTTCCGAAAGACCCTGGGACCTGT 4243 Query 552071 AGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGT 552130 || |||| || |||||| ||||| | ||||| | | | || || || | || Sbjct 4242 GGACCAAGCCTTGAGAGATGCAAAGTTGGATAAGAGAAGCATTGACGAGATAGTTATGGT 4183 Query 552131 TGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTA---AGTTCTTATTTCAATG 552186 || || || || ||||| || ||||||| || || ||| ||||| ||| ||| Sbjct 4182 CGGCGGCTCCACCAGAATCCCCAAAATTCAGAAACTGCTTAAAGAGTTC----TTCCATG 4127 Query 552187 GTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTC 552246 | ||| || | ||| | ||||| || || || || || |||||||| || | | Sbjct 4126 GAAAAGAACTGAATTTGTCCATCAATCCGGACGAAGCAGTGGCTTATGGTGCTGCTGTGC 4067 Query 552247 AAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATG 552306 |||| ||||| | |||||| || || | || || || || | || ||||||| Sbjct 4066 AAGCTGCTATCTTGTCTGGAGTAAGCGACAGCACTGTAAAAGATGTTCTTCTGGTAGATG 4007 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | || ||| | || | || | || |||| ||| || | |||||||| |||| || | Sbjct 4006 TGACACCTTTGTCGTTGGGCATTGAGACAGCTGGTGGAGTGATGACTAAGATTATTGAAA 3947 Query 552367 GAAA 552370 | || Sbjct 3946 GGAA 3943 >seq13898 Length=105884 Score = 105 bits (116), Expect = 5e-17 Identities = 131/178 (74%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||||| ||||||||||| ||||| |||||||| |||| Sbjct 93610 ACTGTGCCTGCCTACTTCAACGACTCTCAACGTCAAGCCACTAAGGATGCTGGTGCTATT 93669 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || |||||||| || || ||||| || || || || || ||||| || ||||| Sbjct 93670 GCTGGTCTCAATGTTCTCCGCATCATCAACGAGCCGACAGCAGCAGCACTGGCTTATGGT 93729 Query 550529 CTTGATAAACAT---AATGAT--CAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || || | | || | |||||| ||| ||||||||||| | ||||| Sbjct 93730 CTGGACAAGAAGCTGACTGGTGACAAGAA-----TGTGCTCATCTTTGACTTGGGAGG 93782 >seq12671 Length=47351 Score = 93.3 bits (102), Expect = 3e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || |||||||||||| |||| || || || ||||||||||| || |||||||| |||||| Sbjct 38262 GGAATTCCTCCTGCTTCTCGCGGTGTGCCTCAAATTGAAGTAACGTTCGATATTGATGCC 38203 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGA 552595 ||||||||| | ||||| | ||| |||| Sbjct 38202 AATGGAATTGTTAATGTCTCAGCTCGTGA 38174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028502203504900