Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1891 118 8e-22 seq12663 89.7 4e-13 seq13959 82.4 6e-11 seq10171 82.4 6e-11 seq973 82.4 6e-11 >seq1891 Length=13189 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || ||||| || || ||| |||| Sbjct 7902 AGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGG 7961 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || ||||||||||||||||| |||| ||||||||| || | ||||| ||| ||| Sbjct 7962 CCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 8021 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | || || || ||||| |||| || Sbjct 8022 TTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTG 8081 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| ||||| || |||||||| Sbjct 8082 ATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || || || ||||| || || ||| |||| Sbjct 9230 AGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGG 9289 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||||||||| |||| ||||||||| || | ||||| ||| ||| Sbjct 9290 CCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 9349 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| || | | || || || ||||| |||| || Sbjct 9350 TTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTG 9409 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| |||||||| || ||||| Sbjct 9410 ATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq12663 Length=24299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 ||||| || || || |||||||||| ||| || | ||| | |||||| || || Sbjct 6060 AAGTCAGTCTCCGAGAAGTTGAACAGCAGGACTTTCAGTTCACCTCGGTAATCTTCGTCT 6119 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 | |||||||||||||| ||||||||||| |||| || ||||| || | ||||| ||| Sbjct 6120 ACAACACCAGCACCCACATCGATGAAGTGTTTGAAAGCCAGTCCGGATCTAGGCGCTATT 6179 Query 9244 CGACCGTAGCATCC 9257 ||||| || |||| Sbjct 6180 CGACCATAAGATCC 6193 >seq13959 Length=7774 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 ||||| || || || ||||||| || ||| || ||| | |||||| || ||| Sbjct 5487 AAGTCAGTCTCCGAGAAGTTGAACAACAGAACTTTCAGCCCACCTCGGTAATCTTCGTCG 5428 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 | |||||||||||||| ||||||||||| ||| || ||||| || | ||||| ||| Sbjct 5427 AAAACACCAGCACCCACATCGATGAAGTGTTTGGAAGCCAGTCCGGATCTAGGCGCTATT 5368 Query 9244 CGACCGTA 9251 |||||||| Sbjct 5367 CGACCGTA 5360 >seq10171 Length=5186 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||||||| ||||| |||| |||||| ||||| | |||| |||||||||||| ||||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || || | | | || ||||||||||| || | |||||| || || || | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || ||||| || ||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCAT 497 >seq973 Length=2805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 ||||| || || || ||||||| || ||| || | ||| | |||||| || || Sbjct 1773 AAGTCAGTCTCCGAGAAGTTGAACAACAGGACTTTCAGTTCACCTCGGTAATCTTCGTCT 1714 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 | |||||||||||||| ||||||||||| ||| || ||||| || | ||||| ||| Sbjct 1713 ACAACACCAGCACCCACATCGATGAAGTGTTTGGAAGCCAGTCCGGATCTAGGCGCTATT 1654 Query 9244 CGACCGTA 9251 |||||||| Sbjct 1653 CGACCGTA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380867913418230