Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02]
15,010 sequences; 90,131,014 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1891 118 8e-22
seq12663 89.7 4e-13
seq13959 82.4 6e-11
seq10171 82.4 6e-11
seq973 82.4 6e-11
>seq1891
Length=13189
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| || ||| ||| || || || ||||| || || ||| ||||
Sbjct 7902 AGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGG 7961
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || ||||||||||||||||| |||| ||||||||| || | ||||| ||| |||
Sbjct 7962 CCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 8021
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | || || || ||||| |||| ||
Sbjct 8022 TTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTG 8081
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| ||||| || ||||||||
Sbjct 8082 ATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| ||| || ||| ||| || || || ||||| || || ||| ||||
Sbjct 9230 AGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGG 9289
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||||||||||||||||||| |||| ||||||||| || | ||||| ||| |||
Sbjct 9290 CCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 9349
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | || || || ||||| |||| ||
Sbjct 9350 TTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTG 9409
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||| |||||||| || |||||
Sbjct 9410 ATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447
>seq12663
Length=24299
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183
||||| || || || |||||||||| ||| || | ||| | |||||| || ||
Sbjct 6060 AAGTCAGTCTCCGAGAAGTTGAACAGCAGGACTTTCAGTTCACCTCGGTAATCTTCGTCT 6119
Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243
| |||||||||||||| ||||||||||| |||| || ||||| || | ||||| |||
Sbjct 6120 ACAACACCAGCACCCACATCGATGAAGTGTTTGAAAGCCAGTCCGGATCTAGGCGCTATT 6179
Query 9244 CGACCGTAGCATCC 9257
||||| || ||||
Sbjct 6180 CGACCATAAGATCC 6193
>seq13959
Length=7774
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183
||||| || || || ||||||| || ||| || ||| | |||||| || |||
Sbjct 5487 AAGTCAGTCTCCGAGAAGTTGAACAACAGAACTTTCAGCCCACCTCGGTAATCTTCGTCG 5428
Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243
| |||||||||||||| ||||||||||| ||| || ||||| || | ||||| |||
Sbjct 5427 AAAACACCAGCACCCACATCGATGAAGTGTTTGGAAGCCAGTCCGGATCTAGGCGCTATT 5368
Query 9244 CGACCGTA 9251
||||||||
Sbjct 5367 CGACCGTA 5360
>seq10171
Length=5186
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
||||||| ||||| |||| |||||| ||||| | |||| |||||||||||| |||||
Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| || || | | | || ||||||||||| || | |||||| || || || |
Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522
Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766
||| || || ||||| || |||||
Sbjct 521 TCAGTGTCTTGACAAAGATTTGCAT 497
>seq973
Length=2805
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183
||||| || || || ||||||| || ||| || | ||| | |||||| || ||
Sbjct 1773 AAGTCAGTCTCCGAGAAGTTGAACAACAGGACTTTCAGTTCACCTCGGTAATCTTCGTCT 1714
Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243
| |||||||||||||| ||||||||||| ||| || ||||| || | ||||| |||
Sbjct 1713 ACAACACCAGCACCCACATCGATGAAGTGTTTGGAAGCCAGTCCGGATCTAGGCGCTATT 1654
Query 9244 CGACCGTA 9251
||||||||
Sbjct 1653 CGACCGTA 1646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380867913418230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |