Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13898 159 2e-33 seq7895 111 1e-18 seq14124 107 1e-17 seq1891 98.7 6e-15 seq11196 89.7 3e-12 seq12671 87.8 1e-11 >seq13898 Length=105884 Score = 159 bits (176), Expect = 2e-33 Identities = 276/396 (70%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| |||||||| || || |||||||| || || |||||||| ||| | ||||| | Sbjct 94270 AATCCAGATGAAGCAGTGGCCTATGGAGCAGCAGTGCAAGCAGCCATTCTCTCAGGAGTA 94329 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 ||| | | | || || | | | || || || ||||| || || | || || Sbjct 94330 CAGGACAGCACAGTCAAAGATGTGTTGTTGGTGGATGTGACTCCTCTGTCTCTGGGCATT 94389 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT-ACTCCTATCCCATGCAA 475971 || |||| |||||| | ||||| || | || || | || ||||| ||||| ||| Sbjct 94390 GAGACAGCTGGAGGAGTAATGACCAAGATCATCGAACGCAACCACTCC-ATCCCTGCCAA 94448 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | || || ||| |||| ||||| || || ||| || | || | ||||||| | || Sbjct 94449 AGCTTCCCAAACATTCACCACCTATTCCGACAACCAACCAGCAGTCAGCATCCAAGTGTT 94508 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-AG 476090 |||||||||| || | || ||||| || ||| ||||| ||||| | ||||| | Sbjct 94509 TGAAGGTGAACGAGCCATGACCAAAGACAACAACCGTCTTGGCACTTTCGA-CTTGACTG 94567 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 | ||||| || || || |||||||| ||||| |||||||| || |||||| | ||||| | Sbjct 94568 GCATTCCCCCAGCCCCTAGAGGAGTGCCTCAGATTGAAGTCACCTTTGATCTGGATGCCA 94627 Query 476151 ATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA 476186 | || ||||| |||| ||||| || || |||| Sbjct 94628 ACGGCATTCTGCATGTGTCTGCTGTGGACAAGTCTA 94663 Score = 131 bits (144), Expect = 1e-24 Identities = 396/600 (66%), Gaps = 20/600 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| ||||| | || ||||| || |||||| | || | || || || ||| Sbjct 93193 GCTATTGGAATTGACCTTGGCACTACCTATTCTTGTGTTGGGGTCTACCAGAACGGCAAA 93252 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||| || || || | | ||||| ||||| | || ||| Sbjct 93253 GTCGAGATCATTGCCAACAGTCAGGGCAACAAATGCACACCCAGTTATGTGGCGTTCACT 93312 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || | || |||||||||| || ||| | || | || || |||| || Sbjct 93313 GACCAAGAGCGACTGATTGGAGATGGCGCCAAAGACCAGGTGGCTCGCAACCCTGAGAAC 93372 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || ||||| || || ||| || |||||||||| ||||| || | ||| ||| Sbjct 93373 ACCATTTTCGACGCCAAACGACTGATTGGTCGACGCTTTGAGGACGAGAGTGTGCAAAAG 93432 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAG 474626 || || ||||||||||| || ||||| || || || |||||| | | || | Sbjct 93433 GACATCAAACATTGGCCTTTCAAAGTGATCAACCAGGGCGGCAAACCAGCTGTCCAGGTG 93492 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCA--ATGGTT 474682 ||| | | || ||| || | |||| || || | || | || ||||| Sbjct 93493 GAATTTATG--GGCCAAAAGAAGG--TGTTCAAGCCAGAGGAGAT--CAGCAGCATGGTG 93546 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | |||| ||||| | || || ||| | || || || || ||| | || || || Sbjct 93547 CTCACCAAGATGAAGGAGACAGCTGAGGCC-TACCTCGGTCATCCAGTCAAAGAAGCTGT 93605 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 | ||||| || || || || || || |||||||||||||| ||||| ||||| || Sbjct 93606 GGTCACTGTGCCTGCCTACTTCAACGACTCTCAACGTCAAGCCACTAAGGATGCTGGTGC 93665 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||||| |||||| | || || || || || || |||||||| ||||| ||||| Sbjct 93666 TATTGCTGGTCTCAATGTTCTCCGCATCATCAACGAGCCGACAGCAGCAGCACTGGCTTA 93725 Query 474862 TGGTCTTGATAAGAATTCTGAC---AAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 |||||| || ||||| ||||| | ||| ||||| | |||||||| | ||||| Sbjct 93726 TGGTCTGGACAAGAA-GCTGACTGGTGACAAG--AATGTGCTCATCTTTGACTTGGGAGG 93782 >seq7895 Length=6681 Score = 111 bits (122), Expect = 1e-18 Identities = 315/471 (67%), Gaps = 20/471 (4%) Strand=Plus/Minus Query 475493 AGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAA 475552 |||||||||||||| |||||| ||| |||| || | ||||| |||| ||||| Sbjct 4403 AGAACTGCTTGTGAGGCTGCTAAACGAACTCTCTCCAACTCCACTCAGGCTACCATTGAA 4344 Query 475553 GTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAA 475612 | |||||||| ||||| ||||| || | | | || | | | || | |||||| Sbjct 4343 ATAGATTCTCTATTTGATGGAATCGACTTTCACACCACACTCAGTCGAGCCAGGTTTGAA 4284 Query 475613 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGAT 475672 || | ||| | ||||| || |||| || | | ||| || || |||| | |||||| Sbjct 4283 GAGTTGTGTGCAGATCTGTTCCGAAAGACCCTGGGACCTGTGGACCAAGCCTTGAGAGAT 4224 Query 475673 TCTAAACTTGACAAATCACAAG--TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAA 475730 | ||| ||| | | | ||| | | || || ||| | || || || || || |||| Sbjct 4223 GC-AAAGTTG-GATAAGAGAAGCATTGACGAGATAGTTATGGTCGGCGGCTCCACCAGAA 4166 Query 475731 T-TCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGT 475789 | |||||| | ||| || ||||| | | || |||| ||||| || |||| | Sbjct 4165 TCCCCAAAATTCAGA-AACTGCTTAAAGAGTTCTTCCATGG--AAAAG--AACTGAATTT 4111 Query 475790 G----TAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 | | ||||| || ||||| || || ||||| |||||||| ||||| ||||| || || Sbjct 4110 GTCCATCAATCCGGACGAAGCAGTGGCTTATGGTGCTGCTGTGCAAGCTGCTATCTTGTC 4051 Query 475846 AGGTCAATCAGACGAGA-AAC--TAAATAATATTGTACTTGTTGACGTAACTCCACTTTC 475902 || | | || ||| | || |||| || || | || || || || || || | || Sbjct 4050 TGG--AGTAAG-CGACAGCACTGTAAAAGATGTTCTTCTGGTAGATGTGACACCTTTGTC 3994 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 || || |||| |||| ||| || | |||||||| ||||||| || || Sbjct 3993 GTTGGGCATTGAGACAGCTGGTGGAGTGATGACTAAGATTATTGAAAGGAA 3943 Score = 107 bits (118), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 |||||||| ||| | | ||||| || || ||| || || || ||| ||||| || Sbjct 3484 GAAGGTGAGAGAGCAATGACTAAGGACAACAACCGTCTAGGCACCTTTGATCTTACTGGC 3425 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 |||||||| ||||| ||||| ||||||||||| ||||| || |||||| | ||||| ||| Sbjct 3424 ATTCCTCCAGCTCCTAGAGGTGTTCCTCAAATCGAAGTCACCTTTGATCTGGATGCGAAT 3365 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 || ||||| | ||| | ||| |||||| || Sbjct 3364 GGGATTCTCCACGTTTCCGCTGTTGATAAGTC 3333 >seq14124 Length=51435 Score = 107 bits (118), Expect = 1e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 ||| | ||||| ||||| | |||| || | |||||||| || ||||| |||||| || Sbjct 30100 TATTTGGGACACGAAGTTAAGAATGCCGTTGTGACTGTTCCTGCTTATTTCAATGATGCT 30159 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || || || ||||| || || || |||| || || ||| | |||||| | || || ||| Sbjct 30160 CAGCGACAGGCAACCAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTTCGAATAATT 30219 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || ||||| ||||||||||| | ||| |||| Sbjct 30220 AACGAGCCGACTGCTGCCGCCATTGCTTATGGTTTGGATCAGAA 30263 >seq1891 Length=13189 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || ||||| ||||| || || | || || || | ||||| Sbjct 9226 ACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 9285 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || || | ||||| || |||||||| | || ||||| || || ||||| || Sbjct 9286 TCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCC 9345 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||| ||||| |||||| ||| ||||| || || | ||| | Sbjct 9346 TTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAA 9405 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||||||||| || || ||||| Sbjct 9406 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTG 9444 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | || || | ||||| || |||||||| | || ||||| || || ||| Sbjct 7953 AGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 8012 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || |||||||||||||| ||||| |||||| ||| ||||| || || | | Sbjct 8013 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACT 8072 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | ||| || || || |||||||||||||| ||||| || || Sbjct 8073 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTG 8116 >seq11196 Length=68467 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || ||||| |||||| |||| || || ||||| || || | Sbjct 41791 ATGCTGTTGTAACCGTCCCCGCTTATTTCAATGATGCTCAGCGACAGGCAACCAAGGACG 41850 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| || ||| | |||||| | | || || || || || ||||| ||||| Sbjct 41851 CTGGAACAATCGCCGGTTTAAATGTTGTGAGAATCATCAACGAGCCCACAGCTGCCGCTA 41910 Query 474855 TTGCTTATGGTCTTGAT 474871 ||||||||||||| ||| Sbjct 41911 TTGCTTATGGTCTGGAT 41927 >seq12671 Length=47351 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 ||||| || |||||||||||| | | || || |||||||||||||| || || ||||| Sbjct 38269 TCTTGTTGGAATTCCTCCTGCTTCTCGCGGTGTGCCTCAAATTGAAGTAACGTTCGATAT 38210 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCTTGTGA 476178 |||||| ||||| ||| ||||||| | ||| |||| Sbjct 38209 TGATGCCAATGGAATTGTTAATGTCTCAGCTCGTGA 38174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267535348271480