Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14918 107 4e-18 seq8124 102 2e-16 seq14012 84.2 4e-11 seq8372 84.2 4e-11 >seq14918 Length=33047 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| |||| ||| || || || || || |||||||||||||| |||||| Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || |||| || ||||| || ||||| ||||| ||||| Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||| |||| || ||||||||| Sbjct 422 AGTGTCTTAACGAAGATCTGCATT 399 >seq8124 Length=14328 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| |||| ||| || || || || || |||||||||||||| |||||| Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || |||| || ||||| || ||||| ||||| ||||| Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | ||| |||| || |||| |||| Sbjct 8940 AGTGTCTTAACGAAGATCTACATT 8917 >seq14012 Length=40231 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| ||||| ||||| |||||||| ||| || | ||| ||||| |||||||||| Sbjct 1240 AAACCTCATCCCTGGATATCAATTCATTGCTATGCGTCAGTCCAGGCATCAATCCTCTCT 1299 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGA 49953 | || | |||||| |||| || ||||| | ||||| || || || |||| Sbjct 1300 TCTTCAACCAAAAAATTGCAGCGAAACTCCCGGAAAAAAAAATCCCTTCGA 1350 >seq8372 Length=2112 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| || | ||| ||||| ||||| ||||| || || || || || || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| || | || |||| ||| ||||| ||||| || || || || ||| Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTT 1295 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 || || || | || || ||||| || Sbjct 1294 AAAGTCTTCACGAAAATTTGCATATT 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984290669113500