Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1891 143 2e-29 seq14918 100 3e-16 seq8124 96.9 3e-15 seq8372 87.8 2e-12 seq10171 82.4 7e-11 >seq1891 Length=13189 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || | ||||| ||||||| | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| ||||| || || || || ||| Sbjct 8059 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 8000 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| |||||||| || ||| | ||||| ||| | ||||| || ||| Sbjct 7999 CAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAAC 7940 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| || |||||| | || |||| ||||| Sbjct 7939 ATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGG 7893 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || || || | ||||| ||||||| | Sbjct 9447 ATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 9388 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| ||||| || || || || ||| Sbjct 9387 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 9328 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| |||||||| || ||| ||||||| ||| | || || || ||| Sbjct 9327 CAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGGACTACAAC 9268 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || ||||| || ||||| | || |||| |||||| Sbjct 9267 ATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGGC 9220 >seq14918 Length=33047 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || ||||| |||||||||||||| || || | Sbjct 400 ATGCAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTCT 459 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || |||||||| |||||||| || || || || || Sbjct 460 GACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCAG 519 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 520 CAGCGATTGATCTTTGCTGGTAA 542 >seq8124 Length=14328 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| |||| || || || || ||||| |||||||||||||| || || | Sbjct 8918 ATGTAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTCT 8977 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || |||||||| |||||||| || || || || || Sbjct 8978 GACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCAG 9037 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 9038 CAGCGATTGATCTTTGCTGGTAA 9060 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || || || || || || ||||| ||||| | Sbjct 7944 ATGCAAATTTTCGTGAAGACTTTGACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCG 8003 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||| ||||| || ||||| || || ||||| Sbjct 8004 GACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAG 8063 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||||| || || Sbjct 8064 CAGCGTTTGATCTTTGCTGGTAA 8086 >seq8372 Length=2112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| || || || || || || ||||| ||||| | Sbjct 1272 ATGCAAATTTTCGTGAAGACTTTAACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCG 1331 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||| ||||| || ||||| || || ||||| Sbjct 1332 GACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAG 1391 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||||| || || Sbjct 1392 CAGCGTTTGATCTTTGCTGGTAA 1414 >seq10171 Length=5186 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || |||||||||||||| || || | Sbjct 497 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTCT 556 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || ||||| Sbjct 557 GACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAG 616 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||||||| || || Sbjct 617 CAGCGATTGATCTTTGCTGGTAA 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449813187962800