Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6267 140 5e-27 seq10758 113 7e-19 seq7689 91.5 2e-12 >seq6267 Length=7819 Score = 140 bits (154), Expect = 5e-27 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| |||||| || || ||| Sbjct 3498 TGTACTTGGTGACCGCCTTGGTGCCCTCAGACACAGCATGCTTGGCCAACTCTCCAGGCA 3439 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || | ||||||||| || |||| ||| || | ||||| || | Sbjct 3438 GGATCAGTCGAACAGAGGTCTGGATTTCTCGGGAAGAGATGGTAGATCTTTTGTT-GTAC 3380 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||| || | |||||| | | ||||| |||| || || || ||||| |||||| Sbjct 3379 TGAGCCAACCGACTGGCCTCTGCAGCAATGCGCTCGAACACATCATTCACAAAGGAGTTC 3320 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||| | ||| ||||||||| ||||||||| |||||||||||||| Sbjct 3319 ATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGGACCTGCTTGAGCAC 3264 >seq10758 Length=11419 Score = 113 bits (124), Expect = 7e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || |||||| |||||| || || ||| Sbjct 7641 TGTACTTGGTGACCGCCTTGGTGCCCTCAGATACAGCGTGCTTGGCCAACTCTCCTGGCA 7700 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || | ||||| || || || | | || ||| |||||||| Sbjct 7701 AAATGAGACGGACAGATGTCTGAATTTCCCGTGAGGAAATAGTGGATCGCTTGTTGTATT 7760 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| ||| || | | || || || | | || ||||| || ||||||| Sbjct 7761 GGGCCAATCGGCTGGCTTCAGCAGCAATTCGCTCAAAGACATCATTGACGAAAGAGTTCA 7820 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||| | ||| ||| ||||| ||||||||| |||||||||||||| Sbjct 7821 TGATGCTCATGGCCTTGGAGGAAATGCCGGTGTCGGGGTGGACCTGCTTGAGCAC 7875 >seq7689 Length=36686 Score = 91.5 bits (100), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || |||||| |||| | || || | | Sbjct 20171 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCGTGCTTGGCTAACTCTCCTGGTA 20230 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||| ||||||||| ||||| | | ||| ||| |||||||| || | Sbjct 20231 GGATTAGACGAACGGAGGTCTGGATTTCGCGAGAGGAGATGGTGGAACGCTTGTT-GTAC 20289 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1485642 | ||||| || || || | |||| || |||| | || ||||||||| Sbjct 20290 TGGGCCAGTCGAGAAGCTTCCGCCGCGATTCGCTCGAAAACATCATTGACAAAC 20343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914649717839390