Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14918 102 6e-17 seq8124 98.7 8e-16 seq1891 96.9 3e-15 seq8372 87.8 1e-12 >seq14918 Length=33047 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||||| ||||| ||||||||||| || ||||| ||||| | ||| Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | |||||||| || ||||| || || || ||||||||||| Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || ||||||||| Sbjct 422 AGTGTCTTAACGAAGATCTGCATT 399 >seq8124 Length=14328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||||| ||||| ||||||||||| || ||||| ||||| | ||| Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | |||||||| || ||||| || || || ||||||||||| Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || |||| |||| Sbjct 8940 AGTGTCTTAACGAAGATCTACATT 8917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| | ||||||||||| || || ||||| ||||| || | || Sbjct 8086 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 8027 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||||| | || | ||||| || ||| ||||||||||| || || || || || Sbjct 8026 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTC 7967 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || ||||| || Sbjct 7966 AAAGTCTTCACGAAAATTTGCATATT 7941 >seq1891 Length=13189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || ||| ||||||||||| || ||||| || || || ||||| || || | Sbjct 7892 TCCTCCACGCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 7951 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || || || || | || || || ||| | ||||||| || || || || || Sbjct 7952 AAGAGTTCGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGG 8011 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||| | || |||||| |||| | |||||| ||| || Sbjct 8012 AATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCAC 8071 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || ||||| || | || || || || |||||||| Sbjct 8072 TTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119 >seq8372 Length=2112 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||| | ||||||||||| || || ||||| ||||| || | || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||||| | || | ||||| || ||| ||||||||||| || || || || ||| Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTT 1295 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || ||||| || Sbjct 1294 AAAGTCTTCACGAAAATTTGCATATT 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385148730166410