Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq13898 214 1e-49 seq14124 114 1e-19 seq388 96.9 3e-14 seq1685 93.3 3e-13 seq12489 86.0 5e-11 seq9194 86.0 5e-11 >seq13898 Length=105884 Score = 214 bits (236), Expect = 1e-49 Identities = 975/1517 (64%), Gaps = 57/1517 (4%) Strand=Plus/Minus Query 281393 ATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCA 281452 || || ||||||||| || || || || | |||| ||||| ||||| || |||||| Sbjct 94682 ATCTTGTTGGATTTGCCAGTAGACTTGTCCACAGCAGACACATGCAGAATGCCGTTGGCA 94623 Query 281453 TCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCC 281512 |||| |||||| ||||||||||| ||||| || ||||| | || || || || || | Sbjct 94622 TCCAGATCAAAGGTGACTTCAATCTGAGGCACTCCTCTAGGGGCTGGGGGAATGCCAGTC 94563 Query 281513 AAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATT 281572 || | || || || ||| || || ||||| || | ||||||||| || || | | Sbjct 94562 AAGTCGAAAGTGCCAAGACGGTTGTTGTCTTTGGTCATGGCTCGTTCACCTTCAAACACT 94503 Query 281573 TGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA 281632 ||||| | ||| | | ||| || || ||||| || || ||| | ||| ||| | Sbjct 94502 TGGATGCTGACTGCTGGTTGGTTGTCGGAATAGGTGGTGAATGTTTGGGAAGCTTTGGCA 94443 Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692 || || | ||| | || || || |||||||| | || |||||||| || | || Sbjct 94442 GGGATGGAGTGGTTGCGTTCGATGATCTTGGTCATTACTCCTCCAGCTGTCTCAATGCCC 94383 Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 281752 ||||| |||||||| ||||| || | | | || || | | | || | || Sbjct 94382 AGAGACAGAGGAGTCACATCCACCAACAACACATCTTTGACTGTGCTGTCCTGTACTCCT 94323 Query 281753 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTA----AC 281808 ||||| |||||||| | || || ||||| || || |||||||| |||||| || Sbjct 94322 GAGAGAATGGCTGCTTGCACTGCTGCTCCATAGGCCACTGCTTCATCTGGATTAATGGAC 94263 Query 281809 AGTTTCATTTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCT-TACCTTAGG 281865 | |||| || | |||||| | ||| || | ||| || |||| ||| || || || Sbjct 94262 AAGTTCA---AG-TCTTTACCGTGGAAGAACTCCTTG--AGCAGTT-TCTGCACTTTGGG 94210 Query 281866 AATACGAGATGATCCTCCAACTAATACAATTTCATGCA-CCTGTGATTTATCCAGTTTTG 281924 ||| |||| || || || || | || || || | | ||| | || |||||||| | Sbjct 94209 AATGCGAGTAGAGCCACCCACCATCACTATCTCGTCAATACTGCG-CTTGTCCAGTTTAG 94151 Query 281925 AATCCAATAAAACTTTTTCAACGGGTTC--AAGACCAGCTCTAAACAAGTCTGAACAAAG 281982 ||| || | | || || ||| | ||| | | | || | || | ||| | Sbjct 94150 CATCTCTCAATGCATGCTCCACAGGTCCCAAAGTCTGG--CGGAATAGGTGGGCACACAA 94093 Query 281983 TTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATC 282042 || || || | ||||| | | |||| | | || || || || ||| ||| || Sbjct 94092 CTCCTCAAACCTGGCTCTGCTCAAAGTGGTGTGGAAGTCTATGCCATCACACAGAGAGTC 94033 Query 282043 AACTTCAATCGTAGTTTGAGTCGAA--GAAGATAGTGCACGTTTAGCACGTTCACATGCT 282100 || ||||| |||| |||||| ||| | | | |||| ||||| || |||||||| Sbjct 94032 AATCTCAATGGTAGCTTGAGTGGAACTGGACAAAGTG--CGTTTGGCTGCCTCACATGCA 93975 Query 282101 GTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCT 282158 || || || | || |||||| | | ||||| | | | || || ||| |||| Sbjct 93974 GTTCTCAGACGTCTCAAGGCTCTGG--GATTGTTGCTGATGTCACGGCCATGTTTCCTCT 93917 Query 282159 TGAAATCTTCAACACACCATGTTACAAGA---CGATTATCAAAATCTTCACCTCCCAATT 282215 |||| ||| | | ||| ||||| | || ||||| ||||| ||||||| | Sbjct 93916 TGAACTCTGCTTTTAA--ATG-GGCAAGAATGAGGTTGTCAAAGTCTTCTCCTCCCAGAT 93860 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAG 282272 || | ||| | || | | | |||| || || ||| || ||| || || | Sbjct 93859 GGGTGTCTCCAGCAGTTGATTTGACTTCAAATAGAGATCCTTCAGCAATGCTCAGAATGG 93800 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC-TTTGTCTTGG 282331 |||||| || || || |||| ||||| || || |||||| | || ||| | Sbjct 93799 ACACATCAAAAGTGCCTCCTCCCAAGTCAAAGATGAGCACATTCTTGTCACCAGTC-AGC 93741 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | || || || || || || || || || | | |||| Sbjct 93740 TTCTTGTCCAGACCATAAGCCAGTGCTGCTGCTGTCGGCTCGTTGATGATGCGGAGAACA 93681 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| || ||||| ||||||||||| | ||| || ||||| || || Sbjct 93680 TTGAGACCAGCAATAGCACCAGCATCCTTAGTGGCTTGACGTTGAGAGTCGTTGAAGTAG 93621 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| ||||| | || || ||| | ||| | || | || || ||||| | Sbjct 93620 GCAGGCACAGTGACCACAGCTTCTTTGACTGGATGACCGAGGTAGGCCTCAGCTGTCTCC 93561 Query 282512 TTCATTTTACTTAAAATCAT--TGATGAAATTTGTTCTGG--AGAATA--TTGCTTGGAT 282565 ||||| || | | | ||| || || || | ||||| ||| | || || | Sbjct 93560 TTCATCTTGGTGAGCACCATGCTGCTG--ATCTCCTCTGGCTTGAACACCTTCTTTTGGC 93503 Query 282566 TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGC 282625 ||| | || || | | | |||||| || || || ||||| || ||| Sbjct 93502 CCAT----AAATTCCACCTGGACAGCTGGTTTGCCGCCCTGGTTGATCACTTTGAAAGGC 93447 Query 282626 CAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTT 282685 |||| ||| || || ||| ||||| | ||| | ||| || |||||| | |||||| Sbjct 93446 CAATGTTTGATGTCCTTTTGCACACTCTCGTCCTCAAAGCGTCGACCAATCAGTCGTTTG 93387 Query 282686 GCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATC 282745 || || ||||| || || || || || | || | |||||| ||||||||||| Sbjct 93386 GCGTCGAAAATGGTGTTCTCAGGGTTGCGAGCCACCTGGTCTTTGGCGCCATCTCCAATC 93327 Query 282746 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC---GATTACCTTGATCA 282802 || | ||| || || || | ||||| || | ||||| || || ||| Sbjct 93326 AGTCGCTCTTGGTCAGTGAACGCCACATA-ACTG--GGTGTGCATTTGTTGCCCTGACTG 93270 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 || ||||| || || ||||| || || || | || || |||||| | | || || || Sbjct 93269 TTGGCAATGATCTCGACTTTGCCGTTCTGGTAGACCCCAACACAAGAATAGGTAGTGCCA 93210 Query 282863 AAATCAATACCAATAGC 282879 | ||||| |||||||| Sbjct 93209 AGGTCAATTCCAATAGC 93193 >seq14124 Length=51435 Score = 114 bits (126), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 ||| | |||||| |||| || |||||||| || || ||||| |||| | |||||| | Sbjct 30258 ATCCAAACCATAAGCAATGGCGGCAGCAGTCGGCTCGTTAATTATTCGAACAACATTTAA 30199 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 |||||| || ||||||| || || || || |||| || | ||| || ||||| ||||| Sbjct 30198 ACCAGCGATCGTTCCTGCGTCCTTGGTTGCCTGTCGCTGAGCATCATTGAAATAAGCAGG 30139 Query 282457 AACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 |||||| | |||||||| | ||||| | ||| | |||||| ||||||| Sbjct 30138 AACAGTCACAACGGCATTCTTAACTTCGTGTCCCAAATAAGCCTCAGCTGTTT 30086 >seq388 Length=6371 Score = 96.9 bits (106), Expect = 3e-14 Identities = 287/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 281472 CAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGAT 281531 ||||||| || || ||||| ||||||| ||||| || | | ||| | || || Sbjct 4997 CAATTTGTGGAACGCCTCTGGGAGCAGGAGGGATGCCACTAAGCTCGAATTTGCCGAGCA 4938 Query 281532 TATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTT 281591 ||| || || || || | ||||| || ||| | | |||||| || ||| | Sbjct 4937 AATTGTTGTCCTTGGTCATGGCACGTTCGCCTTCGTAGACTTGGATGAGCACACCAGGCT 4878 Query 281592 GATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 | || || || || || || || | |||| || | || ||| || || ||||| | Sbjct 4877 GGTTGTCGGAGTATGTGGTGAA-AGTCTGAGAAGTCTTGGTAGGGATGGTGGTGTTGCGT 4819 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 | ||| | |||||| | ||| ||||| || || | ||| || ||||| || | ||| Sbjct 4818 TTAATCAACGAGGTCATCACACCTCCAGCAGTCTCAATACCCAGCGAAAGTGGGGCGACG 4759 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGAC-CAACA-AGAATAGCTGCTT 281768 || | || | | | ||||| || || | ||| | | ||| ||||| || |||| Sbjct 4758 TCGAGCAGAAGCAGGTCTTGAACATTCTC--CGACTTGTCTCCACACAGAATGGCGGCTT 4701 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 | | ||||||||||||||| || || ||||| ||||| | | | || || | ||| | Sbjct 4700 GCACAGCAGCACCATATGCGACGGCCTCATCCGGATTGATGGACTTGTTAAGCTCTTTGC 4641 Query 281829 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 281887 | ||| || | ||| || || | ||| ||||| |||||||| | || || ||||| Sbjct 4640 CGGAGAAGAAGTCTGAGAGCAGCT-TCTGCACCTTGGGAATACGGGTGGAGCCACCAACC 4582 Query 281888 AATACAATTTCATG 281901 | ||||| ||||| Sbjct 4581 AGGACAATGTCATG 4568 >seq1685 Length=49379 Score = 93.3 bits (102), Expect = 3e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 163427 TTTTGCTATTTTTATTGAACCGTGGCATGGAGACATATTCTTTTTTCTTGATCTCAAGAA 163486 ||||||||| | | || || ||||||| ||| || | ||||||||| ||||| || Sbjct 5623 TTTTGCTATCTACTTGGAGCCATGGCATGCAGATATTATGGATTTTCTTGAGCTCAAAAA 5682 Query 163487 AAATACTGGAGCAGAAACAGAAAGAGCCAGAGATTTATTTTTGGGTTTGATGATTAATGA 163546 |||| ||| ||||| ||| |||| ||||||||||||| || ||| |||| || Sbjct 5683 GAATATTGGGTCAGAAGAAGACCGAGCTAGAGATTTATTTTATGGATTGTGGATTCCCGA 5742 Query 163547 CATTTTCATGGAAAGAGTTTATAAAGACGATGTTTGGTCATTAATGTGTCCGTCTCAATG 163606 |||| ||| ||||||| | | || | | |||||||| |||||||| | | || Sbjct 5743 TCTTTTTATGAAAAGAGTAGAGACTGATCAAATGTGGTCATTGATGTGTCCTCATGATTG 5802 Query 163607 TCCT 163610 |||| Sbjct 5803 TCCT 5806 >seq12489 Length=2929 Score = 86.0 bits (94), Expect = 5e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 |||||||| ||||||| ||||| ||||| || ||||||||||| || || | | | | | Sbjct 2390 AGAATAGCGGCTTGAACGGCAGCGCCATAGGCGACAGCTTCATCCGGGTTGATACTCTTA 2331 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGA 281874 ||||||| || || ||| || | || || | || ||| ||||| || ||||||| Sbjct 2330 TTTAGTTCCTTGCCTGAGAAGAAGTCCGAGAGCAATT-TCTGAACCTTCGGGATACGAGT 2272 Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 || || || || | || ||||| || | |||||| || |||| Sbjct 2271 GGAACCACCGACAAGGACGATTTCGTGAATCTGTGACTTGTCCA 2228 >seq9194 Length=1537 Score = 86.0 bits (94), Expect = 5e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 |||||||| ||||||| ||||| ||||| || ||||||||||| || || | | | | | Sbjct 468 AGAATAGCGGCTTGAACGGCAGCGCCATAGGCGACAGCTTCATCTGGGTTGATACTCTTA 409 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGA 281874 || |||| ||| ||| || || | || || | || ||| ||||| || ||||||| Sbjct 408 TTCAGTTCTTTGCCAGAAAAGAAGTCCGAGAGCAATT-TCTGAACCTTCGGGATACGAGT 350 Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 || || || || | || ||||| || | |||||| || |||| Sbjct 349 GGAACCACCGACGAGAACGATTTCGTGAATCTGTGACTTGTCCA 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739893472432260