Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1891 140 6e-28 seq14890 120 6e-22 seq8124 96.9 7e-15 seq10171 93.3 8e-14 seq8372 91.5 3e-13 seq14918 89.7 1e-12 >seq1891 Length=13189 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || | || || || || || ||||| || || || || || Sbjct 9221 CCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAA 9280 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| ||||| || | || || || ||||| || | || ||||| ||||| || Sbjct 9281 AGAGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGA 9340 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| ||||| || ||||| || || || | | ||| ||| Sbjct 9341 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACT 9400 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| || || |||||||| || | ||||||||||| || ||||| || Sbjct 9401 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCATAAT 9450 >seq14890 Length=108563 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || |||| || |||||||| || ||||||||||| || |||||||| || Sbjct 69742 CCAGCAAAAATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCC 69683 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || || || || || |||||||| || ||||||||||| ||||| Sbjct 69682 TTCACATTCTCGATTGTGTCCGAAGCCTCGACTTCCAACGTGATCGTCTTGCCCGTCAAT 69623 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || ||||| || |||||| Sbjct 69622 GTTTTGACAAAGATTTGCATT 69602 >seq8124 Length=14328 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || ||||| || || ||||| ||||| || || ||||| Sbjct 8086 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 8027 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || || || || | ||| ||||| | ||| |||||||| || ||| Sbjct 8026 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTC 7967 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| Sbjct 7966 AAAGTCTTCACGAAAATTTGCAT 7944 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || || || || || || ||||| |||||||| || || Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || ||| | || ||||| | || || || ||||| ||| Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||| |||| Sbjct 8940 AGTGTCTTAACGAAGATCTACATT 8917 >seq10171 Length=5186 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || |||||||| || || || ||||| || |||||||| Sbjct 639 TTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCTTG 580 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || ||| | || ||||| | || || |||||||| ||| Sbjct 579 GCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTC 520 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 519 AGTGTCTTGACAAAGATTTGCATT 496 >seq8372 Length=2112 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || ||||| || || ||||| ||||| || || ||||| Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| || || || || | ||| ||||| | ||| |||||||| || || Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTT 1295 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| Sbjct 1294 AAAGTCTTCACGAAAATTTGCAT 1272 >seq14918 Length=33047 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || || || || || || || ||||| |||||||| || || Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || ||| | || ||||| | || || || ||||| ||| Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||||||| Sbjct 422 AGTGTCTTAACGAAGATCTGCATT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981638379288390