Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1891 120 3e-22 >seq1891 Length=13189 Score = 120 bits (132), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||| | |||||||| ||||| || ||||| || | || || || ||||| | Sbjct 7914 AAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGGCCG--TCCTCTA 7971 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || || |||| | ||||| ||||| || || |||||||||||||| || Sbjct 7972 ACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGA 8031 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| |||| | || | |||||| ||| ||||| || | ||||| ||| |||| Sbjct 8032 TCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGC 8091 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||||| |||||||| ||||||||| Sbjct 8092 CGGTGAGAGTCTTTACGAAGATCTGCATG 8120 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | || || || ||||| | |||||| | Sbjct 9251 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGGCCG--TCCTCCAACTGCTTAC 9308 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | ||||| ||||| || || |||||||||||||| |||||| | Sbjct 9309 CGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCTT 9368 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| ||| ||||| || | ||||| ||| |||||||| |||| Sbjct 9369 TGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTGAGAG 9428 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||| Sbjct 9429 TCTTTACAAAGATTTGCAT 9447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483330098172400