Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7822 111 4e-19 seq1685 91.5 3e-13 >seq7822 Length=21803 Score = 111 bits (122), Expect = 4e-19 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || ||||||||| | || || |||||| ||||||| | ||||| || || || || Sbjct 9296 TTCGCTATCTATTTGGAGCCGTGGCATGCAGATATCATGGAATTTTTGGAGCTGAAGAAG 9355 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| || ||||||| | | ||||| || || || |||| |||||||| | ||| Sbjct 9356 AATACGGGTGCTGAAGAAGAGCGTGCACGAGACTTGTTCTATGGCCTGTGGATTCCGGAT 9415 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 || |||||||| || || || || | | || ||||| ||||||||||||||| || | Sbjct 9416 TTGTTCATGAAGCGAGTGCACAAAGACGAAATTTGGTCGCTTATGTGTCCTCATGATTGT 9475 Query 110937 CCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 ||||| ||| ||| ||| | || | || || ||| |||||| |||| | |||| Sbjct 9476 CCTGGGCTACATGACTGT-TGGGGCGATGATTTCGAATCGCTTTACAAAAAGTTTGAA 9532 >seq1685 Length=49379 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||||||||| | || || |||||| ||||||| | || || | || || || Sbjct 5624 TTTGCTATCTACTTGGAGCCATGGCATGCAGATATTATGGATTTTCTTGAGCTCAAAAAG 5683 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| || | |||||| | |||| | ||||||||||||| | |||||||| | ||| Sbjct 5684 AATATTGGGTCAGAAGAAGACCGAGCTAGAGATTTATTTTATGGATTGTGGATTCCCGAT 5743 Query 110877 TTATTCATGAAACGTGTTCAAGAAA---ATGGCATGTGGTCTCTTATGTGTCCTCATCGT 110933 | || |||||| | || ||| | || |||||||| | |||||||||||| | Sbjct 5744 CTTTTTATGAAAAGAGT---AGAGACTGATCAAATGTGGTCATTGATGTGTCCTCATGAT 5800 Query 110934 TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 | ||||||||| |||| | ||| | | |||||| | ||||| Sbjct 5801 TGTCCTGGTCTGGATGATTGTTGGGGAGATGTGTTTGATCAGCTTTA 5847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186584557354610