Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12563 86.0 5e-12 seq11661 86.0 5e-12 seq7286 86.0 5e-12 >seq12563 Length=11630 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| || ||||| || ||||||||||| || ||| | ||| | || |||||| | ||| | Sbjct 8416 TGGTGTGCATGATACGGTTGTCAATCAGCTGCTGACCAAACTGGATGGTGTTGAACAAAT 8475 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||| || ||||| || || || | || || || | || Sbjct 8476 CAACAACATTCTCGTTATCGGTATGACAAACCGAAAAGACATGATTGATGAGGCTCTCTT 8535 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||| ||||| ||||| | || | |||||| | || |||||| || ||||| Sbjct 8536 GCGACCAGGTCGAATGGAAGTTCAGCTGGAAATTTCTCTGCCGGATGAAATGGGGCGTGT 8595 Query 19791 GGAAATTTTAAACATACATACA 19812 | ||||| | || || |||||| Sbjct 8596 GCAAATTCTCAAAATTCATACA 8617 >seq11661 Length=52500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| || ||||| || ||||||||||| || ||| | ||| | || |||||| | ||| | Sbjct 3215 TGGTGTGCATGATACGGTTGTCAATCAGCTGCTGACCAAACTGGATGGTGTTGAACAAAT 3156 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||| || ||||| || || || | || || || | || Sbjct 3155 CAACAACATTCTCGTTATCGGTATGACAAACCGAAAAGACATGATTGATGAGGCTCTCTT 3096 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||| ||||| ||||| | || | |||||| | || |||||| || ||||| Sbjct 3095 GCGACCAGGTCGAATGGAAGTTCAGCTGGAAATTTCTCTGCCGGATGAAATGGGGCGTGT 3036 Query 19791 GGAAATTTTAAACATACATACA 19812 | ||||| | || || |||||| Sbjct 3035 GCAAATTCTCAAAATTCATACA 3014 >seq7286 Length=6525 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| || ||||| || ||||||||||| || ||| | ||| | || |||||| | ||| | Sbjct 2847 TGGTGTGCATGATACGGTTGTCAATCAGCTGCTGACCAAACTGGATGGTGTTGAACAAAT 2906 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||| || ||||| || || || | || || || | || Sbjct 2907 CAACAACATTCTCGTTATCGGTATGACAAACCGAAAAGACATGATTGATGAGGCTCTCTT 2966 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||| ||||| ||||| | || | |||||| | || |||||| || ||||| Sbjct 2967 GCGACCAGGTCGAATGGAAGTTCAGCTGGAAATTTCTCTGCCGGATGAAATGGGGCGTGT 3026 Query 19791 GGAAATTTTAAACATACATACA 19812 | ||||| | || || |||||| Sbjct 3027 GCAAATTCTCAAAATTCATACA 3048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397383291635050