Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8124 136 5e-27 seq1891 136 5e-27 seq10171 132 5e-26 seq8372 125 8e-24 seq14890 123 3e-23 seq14918 116 4e-21 seq1685 84.2 2e-11 >seq8124 Length=14328 Score = 136 bits (150), Expect = 5e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| | || |||||||| ||||| || || || ||| | Sbjct 8513 AATGCAAATCTTTGTCAAGACATTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTC 8572 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | |||||||| ||||||||||||||||| |||||||| ||||| Sbjct 8573 TGACACCATTGAGAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCA 8632 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||| | || ||||| || |||| Sbjct 8633 GCAGAGACTGATTTTCGCAGGTA 8655 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| || |||||||| ||||| || ||||| ||| || | Sbjct 8228 ATGCAAATCTTCGTGAAGACGCTCACTGGCAAGACCATTACCCTGGAGGTAGAGGCATCT 8287 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | |||||||| || |||||||||||||| ||||| ||||||||| Sbjct 8288 GATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAG 8347 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| | ||||| || ||| Sbjct 8348 CAGCGCTTGATTTTCGCAGGT 8368 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| | ||||| || ||||| || || ||||| || ||||| || || || ||| | Sbjct 8917 AATGTAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTC 8976 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| ||||||||||||| || || || || || ||||| || ||||| Sbjct 8977 TGACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCA 9036 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||| | || ||||||||||||| Sbjct 9037 GCAGCGATTGATCTTTGCTGGTAAGC 9062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || |||||||| || || | Sbjct 7944 ATGCAAATTTTCGTGAAGACTTTGACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCG 8003 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||||||||||||||| || || || ||| Sbjct 8004 GACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAG 8063 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || |||||||||||| Sbjct 8064 CAGCGTTTGATCTTTGCTGGTAAG 8087 >seq1891 Length=13189 Score = 136 bits (150), Expect = 5e-27 Identities = 172/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| || |||||||||||||| ||||| || ||||||||||| || || | || || | Sbjct 9454 TTAC-ATTATGCAAATCTTTGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGG 9396 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | | | || | || | ||| | || || || || || |||||||| || ||||| | Sbjct 9395 AAGCCAGCGACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCC 9336 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 ||||||| ||||| | |||||||| |||||||| | ||||| | || || || | | Sbjct 9335 CAGACCAACAGCGATTGATTTTTGCCGGTAAGCAGTTGGAGGACGGCCGAACTCTTTCGG 9276 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||| ||||| ||||| || ||||| || | ||||| || || || Sbjct 9275 ACTACAACATCCAGAAGGAGTCCACACTCCATCTGGTGCTTCGTCTGCGTGGAGG 9221 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || | || || || | | Sbjct 8119 ATGCAGATCTTCGTAAAGACTCTCACCGGCAAGACCATCACCTTGGAAGTGGAAGCCAGC 8060 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || || |||||||| || ||||| |||||||| Sbjct 8059 GACACTATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAA 8000 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | |||||||| |||||||| | ||||| | || || || ||||||| || Sbjct 7999 CAGCGATTGATTTTTGCCGGTAAGCAGTTAGAGGACGGCCGAACTCTTTCAGACTACAAC 7940 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || ||| | || | ||||| || || ||| Sbjct 7939 ATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGCGTGGAGGA 7892 >seq10171 Length=5186 Score = 132 bits (146), Expect = 5e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| || || |||||||| ||||| || || || ||| | Sbjct 496 AATGCAAATCTTTGTCAAGACACTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTC 555 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||||| || ||||||||||||||||| ||||| ||||| || Sbjct 556 TGACACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCAGATCA 615 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||| | || ||||||||||||| Sbjct 616 GCAGCGATTGATCTTTGCTGGTAAGC 641 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || |||||||| || || || ||||| ||| || Sbjct 211 AATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATC 270 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 271 TGATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 330 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| | ||||| || ||| Sbjct 331 GCAGCGCTTGATTTTCGCAGGT 352 >seq8372 Length=2112 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || |||||||| || || || ||||| ||| || Sbjct 1849 AATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATC 1908 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 1909 TGATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 1968 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| | ||||| || ||| Sbjct 1969 GCAGCGCTTGATTTTCGCAGGT 1990 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| |||||||| || |||||||| || || || ||||| ||| || | Sbjct 1561 ATGCAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATCT 1620 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | |||||||| || |||||||||||||| ||||| ||||||||| Sbjct 1621 GATACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAG 1680 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| | ||||| || ||| Sbjct 1681 CAGCGCTTGATTTTCGCAGGT 1701 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || |||||||| || || | Sbjct 1272 ATGCAAATTTTCGTGAAGACTTTAACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCG 1331 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||||||||||||||| || || || ||| Sbjct 1332 GACACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAG 1391 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | || |||||||||||| Sbjct 1392 CAGCGTTTGATCTTTGCTGGTAAG 1415 >seq14890 Length=108563 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||||||||| || | || |||||||| || || | || || ||| | Sbjct 69602 AATGCAAATCTTTGTCAAAACATTGACGGGCAAGACGATCACGTTGGAAGTCGAGGCTTC 69661 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||||||||| |||||||||||||| |||||||| ||||| || Sbjct 69662 GGACACAATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGAATTCCACCAGATCA 69721 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| || ||||||||||||| Sbjct 69722 GCAGCGACTCATTTTTGCTGGTA 69744 >seq14918 Length=33047 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27411 AATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAG 27470 ||||||||||||||| | || |||||||| ||||| || || || ||| | ||| | Sbjct 1 AATCTTTGTCAAGACATTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTCTGACAC 60 Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| || | |||||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 61 CATTGAGAACGTTAAGGCTAAGATTCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCG 120 Query 27531 TCTAATTTTTGCTGGTA 27547 | ||||| || |||| Sbjct 121 CTTGATTTTCGCAGGTA 137 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||| || ||||| || || || ||| | Sbjct 399 AATGCAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTC 458 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| ||||||||||||| || || || || || ||||| || ||||| Sbjct 459 TGACACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCA 518 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||| | || ||||||||||||| Sbjct 519 GCAGCGATTGATCTTTGCTGGTAAGC 544 >seq1685 Length=49379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||| || | ||| ||||||||| |||| || || ||||| || | ||| | |||||| Sbjct 6333 AACTGAACAACTTCAGTGCACAAAATAGATGATTTGATTGTGCCTAAGTTCTGTTGGTTT 6274 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGA 81065 |||||| |||||| || ||||| ||| ||| || || || || ||||| | |||||| Sbjct 6273 GACTTGCGGTTGCACGCATCCTTATAGAGCATATAAGGTGTGCCTGTCTCTATCTGTGA 6215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570203395511200