Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1891 141 6e-29 seq8372 82.4 5e-11 >seq1891 Length=13189 Score = 141 bits (156), Expect = 6e-29 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||| || |||||||| ||||| Sbjct 7902 AGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGG 7961 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || ||||||||||| || || ||||||||||| || || | || ||| Sbjct 7962 CCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 8021 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| ||| | || ||||| | ||| |||||||||| || Sbjct 8022 TTGTCTTGGATC-TTGGCTTTGACGTTTTCGATAGTGTCGCTGGCT-TCCACTTCCAAGG 8079 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || ||||| | || || || || ||||||||| Sbjct 8080 TGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCATG 8120 Score = 131 bits (144), Expect = 1e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||| ||| |||||| || ||||| || || ||||| ||||| Sbjct 9230 AGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGG 9289 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || ||||||||||| || || ||||||||||| || || | || ||| Sbjct 9290 CCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 9349 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| ||| | || ||||| | ||| |||||||||| || Sbjct 9350 TTGTCTTGGATC-TTGGCTTTGACGTTTTCGATAGTGTCGCTGGCT-TCCACTTCCAAGG 9407 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| | || || ||||| || ||||| Sbjct 9408 TGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq8372 Length=2112 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || |||||||| || ||||| || | |||||||||||| |||| || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATC-TT 1356 Query 34624 TGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | ||| || | ||||||| | |||| || ||||| | || ||||| || || | Sbjct 1355 GGCTTTGACATTCTCGATTGTGTCCGACGCT-TCGACTTCAAGAGTGATCGTCTTTCCCG 1297 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| || ||||| ||||| ||||| || Sbjct 1296 TTAAAGTCTTCACGAAAATTTGCATATT 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314672025137330