Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1891 154 3e-32 seq10171 105 2e-17 seq8372 105 2e-17 seq8124 104 5e-17 seq14918 87.8 4e-12 seq14890 86.0 1e-11 >seq1891 Length=13189 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || |||||||| || |||||||| || |||| ||| Sbjct 9223 TCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAG 9282 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || |||| |||||| || || || || | || |||||||| || |||| Sbjct 9283 AGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAAT 9342 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| |||||||| ||| ||||||||||| ||||| | ||| || || Sbjct 9343 GCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTC 9402 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || ||||||||||||||||| | ||||| Sbjct 9403 CAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || |||||||| || || | ||| || | || || || | |||| Sbjct 7917 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGGCCGTCCTCTAACTGC 7976 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | || |||||||| || |||| ||||||||||| |||||||| Sbjct 7977 TTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 8036 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| ||||||||||| ||||| | ||| || || | ||||| ||||| || ||| Sbjct 8037 GCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTG 8096 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || | |||||| Sbjct 8097 AGAGTCTTTACGAAGATCTGCAT 8119 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | || |||||||| || |||| || |||||||| |||||||| Sbjct 9016 CTTACCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 9075 Query 211031 TTGTTTCACGTTTTCGATGGTGTC 211054 ||||||||||||||||||||| Sbjct 9076 GGCTTTCACGTTTTCGATGGTGTC 9099 >seq10171 Length=5186 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || | ||| || ||||| || |||| || ||||||||||||||||| Sbjct 351 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 292 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||| Sbjct 291 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 232 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | |||||| Sbjct 231 GTCTTCACAAATATTTGCATT 211 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || || || || || |||| || ||||||||||| |||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | || ||||| |||||||||||||| || || ||||| || || ||||| || | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 | || ||||| ||||| | |||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496 >seq8372 Length=2112 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || | ||| || ||||| || |||| || ||||||||||||||||| Sbjct 1989 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 1930 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||| Sbjct 1929 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 1870 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | |||||| Sbjct 1869 GTCTTCACAAATATTTGCATT 1849 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || || || || || || | ||| ||||||||||||||||| Sbjct 1415 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 1356 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || ||||| ||||| || ||| || || |||||||||||||||||||| Sbjct 1355 GGCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 1296 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| || || | ||||| || Sbjct 1295 TAAAGTCTTCACGAAAATTTGCATATT 1269 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || | ||| || ||||| || |||| || ||||||||||||||||| Sbjct 1700 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 1641 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||| Sbjct 1640 TTGACGTTCTCGATAGTATCAGATGCCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGC 1581 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 1580 GTCTTCACAAATATTTGCAT 1561 >seq8124 Length=14328 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || || || || || || | ||| ||||||||||||||||| Sbjct 8087 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 8028 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || ||||| ||||| || ||| || || |||||||||||||||||||| Sbjct 8027 GGCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 7968 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| || || | ||||| || Sbjct 7967 CAAAGTCTTCACGAAAATTTGCATATT 7941 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || | ||| || ||||| || |||| || ||||||||||||||||| Sbjct 8367 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 8308 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || ||||| || ||||| || || || ||||| || ||||| Sbjct 8307 TTGACGTTCTCGATAGTATCAGATGCCTCTACCTCCAGGGTAATGGTCTTGCCAGTGAGC 8248 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 8247 GTCTTCACGAAGATTTGCAT 8228 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || || | || ||||| ||||||| || ||||||||||| ||||| Sbjct 8653 CCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCC 8594 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || ||||||||||| || || ||||| || || ||||| || || | Sbjct 8593 TTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 8534 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | |||||| Sbjct 8533 GTCTTGACAAAGATTTGCATT 8513 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || || ||||| || |||| ||||| || || ||||| | Sbjct 9062 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 9003 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||| ||||||||||||||||| || || ||||| || || || || || | Sbjct 9002 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 8943 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 | || ||||| || || | || |||| Sbjct 8942 TCAGTGTCTTAACGAAGATCTACATT 8917 >seq14918 Length=33047 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || | ||| || ||||| || |||| || ||||||||||| ||||| Sbjct 135 CCTGCGAAAATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGAATCTTAGCC 76 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || ||||||||||| || || ||||| || || ||||| || || | Sbjct 75 TTAACGTTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 16 Query 211095 GTCTTTACAAA 211105 ||||| ||||| Sbjct 15 GTCTTGACAAA 5 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || ||||| | || || ||||| || |||| ||||| || || ||||| | Sbjct 544 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 485 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||| ||||||||||||||||| || || ||||| || || || || || | Sbjct 484 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 425 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 | || ||||| || || | ||||||| Sbjct 424 TCAGTGTCTTAACGAAGATCTGCATT 399 >seq14890 Length=108563 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || || || || || || || || |||| ||||||||||||||| ||||| Sbjct 69742 CCAGCAAAAATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCC 69683 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| ||||| || || || || | ||||||||||| ||||| | Sbjct 69682 TTCACATTCTCGATTGTGTCCGAAGCCTCGACTTCCAACGTGATCGTCTTGCCCGTCAAT 69623 Query 211095 GTCTTTACAAACACCTGCATTT 211116 || || ||||| | ||||||| Sbjct 69622 GTTTTGACAAAGATTTGCATTT 69601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158929076958650