Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1891 136 9e-27 seq14890 116 9e-21 seq14918 105 2e-17 seq8124 102 2e-16 seq10171 93.3 1e-13 seq8372 89.7 1e-12 seq359 84.2 5e-11 >seq1891 Length=13189 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| ||||| || || |||| ||||| || | | ||||| || || |||| |||| Sbjct 7917 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGGCCGTCCTCTAACTGC 7976 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | ||| |||||||| || ||||| |||||||||||||||||||| Sbjct 7977 TTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTG 8036 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || || |||||| ||||| || |||||| || || ||||| |||||||| || Sbjct 8037 GCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTG 8096 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| |||| ||| | ||||| Sbjct 8097 AGAGTCTTTACGAAGATCTGCAT 8119 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| ||||| || || |||| ||||| || | | ||||| || || Sbjct 9236 AGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCGGCCGTCC 9295 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || || || | ||| |||||||| || ||||| |||||||||||| Sbjct 9296 TCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 9355 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || |||||| ||||| || |||||| || || ||||| ||| Sbjct 9356 TGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTGGCTTCCACTTCCAAGGTGATGGTC 9415 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| |||| || | |||||| Sbjct 9416 TTGCCGGTGAGAGTCTTTACAAAGATTTGCAT 9447 >seq14890 Length=108563 Score = 116 bits (128), Expect = 9e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || ||||| || || || || ||||| ||||||||||| || ||||| | Sbjct 69742 CCAGCAAAAATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCC 69683 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| ||||| || | || || || ||||||||||||||||||||||| Sbjct 69682 TTCACATTCTCGATTGTGTCCGAAGCCTCGACTTCCAACGTGATCGTCTTGCCCGTCAAT 69623 Query 225694 GTTTTTATGAACACTTGCATTT 225715 ||||| | || | |||||||| Sbjct 69622 GTTTTGACAAAGATTTGCATTT 69601 >seq14918 Length=33047 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| ||||| ||||| | ||| || ||||| |||||||| ||||| || |||||||| | Sbjct 544 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 485 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||||||| |||||||||||| || | ||||| || | ||| || || ||||| | Sbjct 484 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 425 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||| | |||||| Sbjct 424 TCAGTGTCTTAACGAAGATCTGCATT 399 >seq8124 Length=14328 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| ||||| ||||| | ||| || ||||| |||||||| ||||| || |||||||| | Sbjct 9062 GCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTT 9003 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||||||| |||||||||||| || | ||||| || | ||| || || ||||| | Sbjct 9002 TAGCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAG 8943 Query 225689 TCAAAGTTTTTATGAA 225704 ||| || || | ||| Sbjct 8942 TCAGTGTCTTAACGAA 8927 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || || || || || || || || |||||||| |||||||| Sbjct 8087 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 8028 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||||| ||||| || | ||| || || | ||||||||||| ||||| Sbjct 8027 GGCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 7968 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | ||| | |||||| || Sbjct 7967 CAAAGTCTTCACGAAAATTTGCATATT 7941 >seq10171 Length=5186 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| ||||| ||||| | ||| || || || |||||||| || |||||||| || |||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||| || ||||||||||| || | ||||| || | ||| || |||||||| | Sbjct 581 TGGCCTTGACGTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAG 522 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | || | ||||||| Sbjct 521 TCAGTGTCTTGACAAAGATTTGCATT 496 >seq8372 Length=2112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| ||||| | || || || || || || || || |||||||| |||||||| Sbjct 1415 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 1356 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||||| ||||| || | ||| || || | ||||||||||| ||||| Sbjct 1355 GGCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGT 1296 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||| | |||||| || Sbjct 1295 TAAAGTCTTCACGAAAATTTGCATATT 1269 >seq359 Length=17181 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || |||||||| || || || || || ||||| || || || ||||| |||||||| Sbjct 11820 AAGATCTGACCATCGGTGATGGAAATGACGTTTGTGGGAATGTAGGCAGACACATCACCA 11761 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| || || | |||||| || || || | ||||||||||||| Sbjct 11760 GCTTGCGTCTCAATAACAGGCAAAGCAGTCAAGGATCCACCACCAA 11715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192301857616940