Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1685 134 2e-26 seq14012 87.8 2e-12 seq4940 87.8 2e-12 >seq1685 Length=49379 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| ||| | ||||| ||||||||||| |||||||| ||||| || |||| || || Sbjct 5848 ATAAAGCTGATCAAACACATCTCCCCAACAATCATCCAGACCAGGACAATCATGAGGACA 5789 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 |||||||||||| ||| || |||| ||||||||| ||||| || ||||| | Sbjct 5788 CATCAATGACCACATTTGATCAGTCTCTACTCTTTTCATAAAAAGATCGGGAATCCACAA 5729 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094 || ||||| ||||| | || | |||||| || |||||||||| || || || Sbjct 5728 TCCATAAAATAAATCTCTAGCTCGGTCTTCTTCTGACCCAATATTCTTTTTGAGCTCAAG 5669 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||| ||||||||||| | ||||||||| || | || || || | | | ||||||| Sbjct 5668 AAAATCCATAATATCTGCATGCCATGGCTCCAAGTAGATAGCAAAACCCGCAGGTCG 5612 >seq14012 Length=40231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48520 CAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAA 48579 || ||||||||||||| || || |||||| |||||| || || || | ||| | | | Sbjct 1927 CAACCAAATTCTCATTGACGATACCATCAGAAGCAGCGAAGAAGGCGAGAACACGAGTGA 1986 Query 48580 TAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 48639 ||||| | || || ||||| || ||||| || ||| | ||||| | | ||| | Sbjct 1987 TAAAAAAACGCTCACTGTCAGTCATGTTGTTCCAATCCTTGGTGTCTTTGGCAAGATCCA 2046 Query 48640 CTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGT 48699 | || || | ||||| ||||| | || || || || | ||| || || | || Sbjct 2047 CCTCCTCGACCACCCAAATAGATGCTACAGCCTTCTTGTAAAATGCCCAAATGTCCCAGT 2106 Query 48700 ATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | ||||| || ||||| ||||| | ||||||||||| Sbjct 2107 ACTGGATCGGAAAAATCACAAAGCGATTTGGATTTT 2142 >seq4940 Length=754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48520 CAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAA 48579 || ||||||||||||| || || |||||| |||||| || || || | ||| | | | Sbjct 423 CAACCAAATTCTCATTGACGATACCATCAGAAGCAGCGAAGAAGGCGAGAACACGAGTGA 482 Query 48580 TAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 48639 ||||| | || || ||||| || ||||| || ||| | ||||| | | ||| | Sbjct 483 TAAAAAAACGCTCACTGTCAGTCATGTTGTTCCAATCCTTGGTGTCTTTGGCAAGATCCA 542 Query 48640 CTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGT 48699 | || || | ||||| ||||| | || || || || | ||| || || | || Sbjct 543 CCTCCTCGACCACCCAAATAGATGCTACAGCCTTCTTGTAAAATGCCCAAATGTCCCAGT 602 Query 48700 ATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | ||||| || ||||| ||||| | ||||||||||| Sbjct 603 ACTGGATCGGAAAAATCACAAAGCGATTTGGATTTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694538462766400