Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14918 95.1 3e-14 seq8124 91.5 3e-13 seq1891 87.8 4e-12 seq8372 84.2 5e-11 >seq14918 Length=33047 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||||||||||| || || ||||| || ||||| ||||| Sbjct 542 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 483 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | | |||| || ||| ||||| || ||||| |||||||| || Sbjct 482 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 423 Query 152082 AGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| ||||||| ||||||| |||| Sbjct 422 AGTGTCTTAACGAAGATCTGCATTCCACCC 393 >seq8124 Length=14328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||||||||||| || || ||||| || ||||| ||||| Sbjct 9060 TTACCAGCAAAGATCAATCGCTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGGATTTTA 9001 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | | |||| || ||| ||||| || ||||| |||||||| || Sbjct 9000 GCCTTCACATTTTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTTTTGCCAGTC 8941 Query 152082 AGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| ||||||| || |||| |||| Sbjct 8940 AGTGTCTTAACGAAGATCTACATTCCACCC 8911 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | |||||| |||| | |||||| ||||| || || || || Sbjct 8086 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 8027 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| |||| | |||| || || ||||||||||| || || || ||||| Sbjct 8026 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTC 7967 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||||||| | ||||| || Sbjct 7966 AAAGTCTTCACGAAAATTTGCATATT 7941 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||| || || ||||||||||||| | || || ||||| || ||||| || Sbjct 8653 CCTGCGAAAATCAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCC 8594 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | |||| || ||| ||||| || ||||| || ||||| || | Sbjct 8593 TTGACATTCTCAATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCAGTCAAT 8534 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| || |||| |||||| Sbjct 8533 GTCTTGACAAAGATTTGCATT 8513 >seq1891 Length=13189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || ||||| || ||||||||||| || | | ||||| || || Sbjct 7908 AGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGGCCGTCC 7967 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || ||||| || || | | ||| ||||| | | || |||||||| ||| Sbjct 7968 TCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 8027 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || |||||| | || | ||| ||| || || ||||| | || || | Sbjct 8028 TGGATCTTGGCTTTGACGTTTTCGATAGTGTCGCTG-GCT-TCCACTTCCAAGGTGATGG 8085 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||| ||||||| |||||| Sbjct 8086 TCTTGCCGGTGAGAGTCTTTACGAAGATCTGCAT 8119 >seq8372 Length=2112 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | |||||| |||| | |||||| ||||| || || || || Sbjct 1414 TTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1355 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| |||| | |||| || || ||||||||||| || || || ||||| Sbjct 1354 GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCGTT 1295 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||||||| | ||||| || Sbjct 1294 AAAGTCTTCACGAAAATTTGCATATT 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153598902231710